View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19219_high_11 (Length: 327)
Name: NF19219_high_11
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_high_11 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 134 - 312
Target Start/End: Original strand, 14512146 - 14512324
Alignment:
| Q |
134 |
tattcttttaaaatagtttcatatgagatttgaacttgttatcgtgaagtgacaaaatcaagttctaacaattgatcttacacctcatggattataacca |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14512146 |
tatttttttaaaatagtttcatatgagatttgaacttcttatcgtgaagtgacaaagtcaagttctaacaattgatcttacacctcatggattataacta |
14512245 |
T |
|
| Q |
234 |
tcaaaatggtgaatgaggtgcaacattggatacttttcgtgacaaatatatttagttgattacatatgattatggttaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14512246 |
tcaaaatggtgaatgaggtgcaacattgggtacttttcgtgacaaatatatttagttgattacatatgattatggttaa |
14512324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 133 - 312
Target Start/End: Original strand, 131434 - 131613
Alignment:
| Q |
133 |
gtattcttttaaaatagtttcatatgagatttgaacttgttatcgtgaagtgacaaaatcaagttctaacaattgatcttacacctcatggattataacc |
232 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
131434 |
gtattctcttaaaagagttttatatgagatttgaacttcctctcgtgaagtcacaaagtcaaattctaacaattgatcttacacctcatggattataacc |
131533 |
T |
|
| Q |
233 |
atcaaaatggtgaatgaggtgcaacattggatacttttcgtgacaaatatatttagttgattacatatgattatggttaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
131534 |
atcaaaatggtgaatgaggtgcaacattgggtactttttgtgacaaatatatttagttgattacatatgattatggttaa |
131613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 147067 - 147031
Alignment:
| Q |
225 |
ttataaccatcaaaatggtgaatgaggtgcaacattg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
147067 |
ttataaccatcaaaatggtgaatgaggtgcaacattg |
147031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University