View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_high_20 (Length: 254)
Name: NF19219_high_20
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_high_20 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 41793384 - 41793626
Alignment:
| Q |
12 |
agagatgaatgaagaataatgaaagctacatagcatgttatgagtccacgtacgtgtggttgtatcatatggcgagggttgctcttatagtataaattat |
111 |
Q |
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| T |
41793384 |
agagatgaatgaaggataatgaaagctacatagcatgttatgagtccacgtacgtgtggttgtatcatatggcgagggttgctcttatagtataaattat |
41793483 |
T |
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| Q |
112 |
tgattgtcatggtttagagaagtcattttctgatgtagtataaaactaagcacatgaacgtgtatgcatgaattgcatattgatgaagacatgcaattga |
211 |
Q |
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| T |
41793484 |
tgattgtcatggtttagagaagtcattttctgatgtagtataaaactaagcacatgaacgtgtatgcatgaattgcatattgatgaagacatgcaattga |
41793583 |
T |
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| Q |
212 |
tatgatttttcatttgatcgtaccaataatgcatattttatac |
254 |
Q |
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| T |
41793584 |
tatgatttttcatttgatcgtaccaataatgcatattttatac |
41793626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 41762995 - 41763124
Alignment:
| Q |
11 |
cagagatgaatgaagaataatg---aaagctacatagc-atgttatgagtccacgtacgtgtggttgtatcatatggcgagggttgctcttatagt---- |
102 |
Q |
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| T |
41762995 |
cagagatgaatgaagaataatgatcaaagctacatagcaatgttatgaatcc----acgtgtggttgtatcatgtggcaagggcgtcccttataatttta |
41763090 |
T |
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| Q |
103 |
-ataaattattgattgtcatggtttagagaagtc |
135 |
Q |
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| T |
41763091 |
gataaattattgattggcatggtttagagaagtc |
41763124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 41797210 - 41797324
Alignment:
| Q |
120 |
atggtttaga-gaagtcattttctgatgtagtataaaactaagcacatgaacgtgtatgcatgaattgcatattgatgaagacatgcaattgata-tgat |
217 |
Q |
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| T |
41797210 |
atggtttagaagaagtcattttctgatgtg---taaaactaagcacatgaacgtgtatgttggaatcgc--attgatgaaga----caattgatattgat |
41797300 |
T |
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| Q |
218 |
ttttcatttgatcgtaccaataat |
241 |
Q |
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| T |
41797301 |
ttttcctttgatcatatcaataat |
41797324 |
T |
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