View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_high_5 (Length: 453)
Name: NF19219_high_5
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 31046748 - 31046329
Alignment:
| Q |
18 |
gttttaaatcgtttgttagagaatttgtaaaatgaaaaaagttactcatctcatgacatagacatgacacacggtaaattgataatgatttaaaaaataa |
117 |
Q |
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| T |
31046748 |
gttttaaatcgtttgtttaagaatttgtaaaatgaaaaaagttactcatctcatgacttagaca-ccgacacggtgaattgataatgatttaaaaaataa |
31046650 |
T |
|
| Q |
118 |
cacaatttagtgtaattacgtgaggtgtcagatcattttcagacacttacaagtatcggagactagagactgaacatgcatttgataagaagtgttggta |
217 |
Q |
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| T |
31046649 |
cacaatttagtgtaattacgtgaggtgtcagatcattttcagacacttacaagtgtcggaaactagagactgaacatgcatttgat-agaaatgttggta |
31046551 |
T |
|
| Q |
218 |
ggtatttaagagttaagagcttaccgttactagtttgagaaagagaaatggttggcgcgttattctattcctgtgaattgaagaatgaaaatttagaagt |
317 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046550 |
ggtatttaagagttaagagctcaccgctactagtttgagaaagagaaatggttggcgcgttattctattcctgtgaattgaagaatgaaaatttagaagt |
31046451 |
T |
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| Q |
318 |
caattatggtcaaaatgcgttgaattattcataggagtttctacaggtagatattttagtggattctagcatattggcataattctagtatagtagtgac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046450 |
caattatggtcaaaatgcgttgaattattcataggagtttctacaggtagatattttagtggattctagcatattggcataattctagtatagtagtgac |
31046351 |
T |
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| Q |
418 |
gtaaaaggtttacgggtctgtg |
439 |
Q |
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|||||||||||| |||| |||| |
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| T |
31046350 |
gtaaaaggtttatgggtttgtg |
31046329 |
T |
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