View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19219_high_6 (Length: 420)

Name: NF19219_high_6
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19219_high_6
NF19219_high_6
[»] chr7 (1 HSPs)
chr7 (11-405)||(9333802-9334199)
[»] chr3 (3 HSPs)
chr3 (11-405)||(22158773-22159167)
chr3 (28-116)||(6078032-6078120)
chr3 (88-120)||(9766018-9766050)
[»] chr4 (3 HSPs)
chr4 (196-405)||(51860875-51861081)
chr4 (244-405)||(39482484-39482645)
chr4 (11-140)||(51861098-51861227)
[»] chr6 (1 HSPs)
chr6 (28-140)||(13550112-13550224)
[»] scaffold0755 (1 HSPs)
scaffold0755 (191-222)||(5442-5473)
[»] chr8 (1 HSPs)
chr8 (191-222)||(22647965-22647996)
[»] chr5 (1 HSPs)
chr5 (191-222)||(27030059-27030090)
[»] chr2 (1 HSPs)
chr2 (191-224)||(24863587-24863620)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 9333802 - 9334199
Alignment:
Q  11 aaaatattaatacaattataaaccaatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaac 110  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9333802 aaaatattaatacaattataaatcaatgtgggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcaccaac 9333901  T
Q  111 taaattatcctctcaaactgagattgaaatnnnnnnnnnnnnntgtatgataaaagtatgtatcataccaattgttgctaaatggatgataaaagagata 210  Q
    ||||||||||||||||||||||||||||||             ||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  9333902 taaattatcctctcaaactgagattgaaataaaaaataaaaagtgattgataaaagtatgtatcatacacattgttgctaaatggatgataaaagagata 9334001  T
Q  211 agaaatatagatctctggatgaaatttctattgcaattataagttggaacgtccctgctcccatttcttca---ttttttgtgtgtgttgaaaaaccaat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||| | |||||||||||||||||    
T  9334002 agaaatatagatctctggatgaaatttctattgcaattataagttggaacgtacctgctcccatttcttcatttttttttttttgtgttgaaaaaccaat 9334101  T
Q  308 agaaccgcttaattggcaaatggatatagaaactgctataaatcagttagtgagtcatgggaagttacaggtaaaaaactgaaatagagggggtatat 405  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  9334102 agaaccgcttaattggcaattggatatagaatctgctataaatcagtgagtgagtcatgagaagttacgggtaaaaaactgaaatagagggggtatat 9334199  T

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Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 22158773 - 22159167
Alignment:
Q  11 aaaatattaatacaattataaaccaatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaac 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22158773 aaaatattaatacaattataaattgatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcaccaac 22158872  T
Q  111 taaattatcctctcaaactgagattgaaatnnnnnnnnnnnnntgtatgataaaagtatgtatcataccaattgttgctaaatggatgataaaagagata 210  Q
    |||||||||||||||| |||||||||||||             | | |||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  22158873 taaattatcctctcaagctgagattgaaataaaaaataaaaagtatgtgataaaagtatgtatcatacccattgttgctaaatggatgatagaagagata 22158972  T
Q  211 agaaatatagatctctggatgaaatttctattgcaattataagttggaacgtccctgctcccatttcttcattttttgtgtgtgttgaaaaaccaataga 310  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  22158973 agaaatatagatctattgatgaaatttctattgcaattataagttggaacgtccctgctcccattccttcattttttttttgtgttgaaaaaccaataga 22159072  T
Q  311 accgcttaattggcaaatggatatagaaactgctataaatcagttagtgagtcatgggaagttacaggtaaaaaactgaaatagagggggtatat 405  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||| ||||| |||||||||||    
T  22159073 accgcttaattggcaattggatatagaaactgctataaatcagttagtgagtcatgagaagttatgggtaaaaaactcaaatatagggggtatat 22159167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 6078120 - 6078032
Alignment:
Q  28 ataaaccaatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaactaaatt 116  Q
    ||||| || |||| ||||| |||| ||||||||| ||| |||| ||  |||||||| |||| |||| |||||||||||| |||||||||    
T  6078120 ataaatcattgtaagggaagtttgaagaaaaagtcaatgaaggatataatagaaacaaaaatttgaccaataaaatcaccaactaaatt 6078032  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 9766050 - 9766018
Alignment:
Q  88 aattgatcaataaaatcacaaactaaattatcc 120  Q
    |||||| ||||||||||||||||||||||||||    
T  9766050 aattgaccaataaaatcacaaactaaattatcc 9766018  T

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Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 196 - 405
Target Start/End: Complemental strand, 51861081 - 51860875
Alignment:
Q  196 atgataaaagagataagaaatatagatctctggatgaaatttctattgcaattataagttggaacgtccctgctcccatttcttcattttttgtgtgtgt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||    
T  51861081 atgataaaagagataagaaatatagatctctggatgaaatttctattgcaattataagttggaacgtccctgctcctatttcttcattttttgt--gtgt 51860984  T
Q  296 tgaaaaaccaatagaaccgcttaattggcaaatggatatagaaactgctataaatcagttagtgagtcatgggaagttacaggtaaaaaactgaaataga 395  Q
    |||||||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  51860983 tgaaaaaccaatagaaccgcttaa-tggtaattggatatagaaacggctataaatcagttagtgagtcatgagaagttacgggtaaaaaactgaaataga 51860885  T
Q  396 gggggtatat 405  Q
    ||||||||||    
T  51860884 gggggtatat 51860875  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 244 - 405
Target Start/End: Original strand, 39482484 - 39482645
Alignment:
Q  244 caattataagttggaacgtccctgctcccatttcttcattttttgtgtgtgttgaaaaaccaatagaaccgcttaattggcaaatggatatagaaactgc 343  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39482484 caattgtaatttggaacgtccctgctcccatttcttcattttttgtgtgtgttgaaaaaccaatagaaccgcttaattggcaattggatatagaaactgc 39482583  T
Q  344 tataaatcagttagtgagtcatgggaagttacaggtaaaaaactgaaatagagggggtatat 405  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  39482584 tataaatcagttagtgactcatgagaagttacgggtaaaaaactgaaatagagggggtatat 39482645  T

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Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 51861227 - 51861098
Alignment:
Q  11 aaaatattaatacaattataaaccaatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaac 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  51861227 aaaatattaatacaattataaatcaatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaactaaaaattgatcaataaaatcaccaac 51861128  T
Q  111 taaattatcctctcaaactgagattgaaat 140  Q
    ||||||||||||||||||||||||||||||    
T  51861127 taaattatcctctcaaactgagattgaaat 51861098  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 13550112 - 13550224
Alignment:
Q  28 ataaaccaatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaactaaattatcctctcaaa 127  Q
    ||||| || |||| ||||| |||| |||||||||  || |||| ||  |||| ||  ||||||||| |||||||||||| |||||||||||||  ||| |    
T  13550112 ataaatcattgtaagggaagtttgaagaaaaagtccatgaaggatataataggaaaaaaaaattgaccaataaaatcaccaactaaattatccattcata 13550211  T
Q  128 ctgagattgaaat 140  Q
    |||| ||||||||    
T  13550212 ctgaaattgaaat 13550224  T

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Target: scaffold0755 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 222
Target Start/End: Complemental strand, 5473 - 5442
Alignment:
Q  191 aatggatgataaaagagataagaaatatagat 222  Q
    ||||||||||||||||||||||||||||||||    
T  5473 aatggatgataaaagagataagaaatatagat 5442  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 222
Target Start/End: Original strand, 22647965 - 22647996
Alignment:
Q  191 aatggatgataaaagagataagaaatatagat 222  Q
    ||||||||||||||||||||||||||||||||    
T  22647965 aatggatgataaaagagataagaaatatagat 22647996  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 222
Target Start/End: Complemental strand, 27030090 - 27030059
Alignment:
Q  191 aatggatgataaaagagataagaaatatagat 222  Q
    ||||||||||||||||||||||||||||||||    
T  27030090 aatggatgataaaagagataagaaatatagat 27030059  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 24863587 - 24863620
Alignment:
Q  191 aatggatgataaaagagataagaaatatagatct 224  Q
    ||||||| ||||||||||||||||||||||||||    
T  24863587 aatggatcataaaagagataagaaatatagatct 24863620  T

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