View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_high_9 (Length: 334)
Name: NF19219_high_9
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 42134124 - 42133822
Alignment:
| Q |
18 |
cagtatcattgcgttgctagaatatgaaaacactaatctagatgacaataacggaatagttttttcccctccctgggtaatatagcctttaattaaatgg |
117 |
Q |
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| T |
42134124 |
cagtatcattgcgttgctagaataggaaaacactaatctagatgacaataaaggaatagttttttcccc-ccctgggtaata--gcctttaattaaatgg |
42134028 |
T |
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| Q |
118 |
aacagaaaatgtccatagacgcaaggttacaattatgatcactgatcagcagcttgctcaatctgtttaataataagtctgggaatgtaattcaattcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42134027 |
aacagaaaatgtccatagacgcaaggttacaattatgatcactgatcagcagcttgctcaatctgtttaataataagtctgggaatgtaattcaattcta |
42133928 |
T |
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| Q |
218 |
gctaattcatgaactaattatattcaattctagctaatacatgcataggagatgaaaatcttaaagtagttggaaagaaaatttactcactcctcaacct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133927 |
gctaattcatgaactaattatattcaattctagctaatacatgcataggagatgaaaatcttaaagtagttggaaagaaaatttactcactcctcaacct |
42133828 |
T |
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| Q |
318 |
gttcat |
323 |
Q |
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|||||| |
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| T |
42133827 |
gttcat |
42133822 |
T |
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