View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19219_low_13 (Length: 316)
Name: NF19219_low_13
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_low_13 |
 | |
|
| [»] scaffold1749 (2 HSPs) |
| | |
|
| [»] scaffold0428 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 31476291 - 31476588
Alignment:
| Q |
1 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31476291 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgtggtcttgt |
31476390 |
T |
|
| Q |
101 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtgttgtgttcaagcatctaaaaagtatgttctacctgtgttctatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31476391 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtgttgtgttcaagcatctaaaaagtatgttctacctgtgttctatga |
31476490 |
T |
|
| Q |
201 |
tgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactctcaaatggtgctac |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31476491 |
tgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatggacacagattcaaacaagactctcaaatggtgctac |
31476588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 31496233 - 31496525
Alignment:
| Q |
3 |
tgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtca |
102 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||| |||| | ||| || |||||||||| ||||||||||| |||| |||||| ||| |
|
|
| T |
31496233 |
tgcatttagagatgacactaatcttccaaaaggtgaatccataggacctaagctcctttgtgcaattgaaaactctcaggtttttgttgtggtcttatca |
31496332 |
T |
|
| Q |
103 |
aagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtgttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgatg |
202 |
Q |
| |
|
| |||||| ||||||||||||| ||||||| ||||||| ||| | ||||| || || | | ||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
31496333 |
aggaactatgctttctcaacttcgtgcttgcaagaattagaaaagatccttgaatgggtcaaggtatctaaaaaacatgttctgcctgttttctatgatg |
31496432 |
T |
|
| Q |
203 |
ttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactctcaaatggtgc |
295 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||| |||||| |||||||||||||| |||||||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
31496433 |
ttgacccttctatggtgcgaaagcaaagtggaatttatggtgaagcatttgtcaaacatgaacaaagattccaacaagactctcagatggtgc |
31496525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 31501402 - 31501697
Alignment:
| Q |
2 |
ttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtc |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| | || || ||| ||||||||||| ||| | |||| ||||||||| | || |
|
|
| T |
31501402 |
ttgcatttagggatgacactaatcttccaaaaggtgaatccatagcatccgagcttcttcgtgcaattgaagattcttatatttttgttgcggtcctctc |
31501501 |
T |
|
| Q |
102 |
aaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtgttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgat |
201 |
Q |
| |
|
|| |||||| |||| ||||| |||||||||| ||||||| ||| | ||||| || || || | ||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
31501502 |
aaggaactatgcttcctcaatttggtgcttgcaagaattagaaaagatccttgaatgcgtccacgtatctaaaaaacatgttctgcctgttttctatgat |
31501601 |
T |
|
| Q |
202 |
gttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactctcaaatggtgcta |
297 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||||| |||||||||||||| |||||||||| | |||| ||||||||||||| ||||||||| |
|
|
| T |
31501602 |
gttgatcctcccgtggtgcgaaagcaaagtgggatttattgtgaagcatttgtcaaacatgaacaaatattccaacaagactctcagatggtgcta |
31501697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 31488876 - 31489027
Alignment:
| Q |
1 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgt |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || ||| ||| ||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
31488876 |
tttgcgtttagagatgacactaagcttcaaaaaggtgaatcgatagcacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctct |
31488975 |
T |
|
| Q |
101 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcct |
152 |
Q |
| |
|
| || ||||| |||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
31488976 |
ccaaaaactatgcttcctcaacttggtgcttgcgagaattggaatacatcct |
31489027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 31030557 - 31030406
Alignment:
| Q |
1 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgt |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| |||| || ||| ||| ||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
31030557 |
tttgcatttagagacgacactaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctct |
31030458 |
T |
|
| Q |
101 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcct |
152 |
Q |
| |
|
| || ||||| |||| |||||||||||||||| |||||||| | ||||||| |
|
|
| T |
31030457 |
ccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatcct |
31030406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 31529336 - 31529056
Alignment:
| Q |
2 |
ttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtc |
101 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||||||||||| ||||||||||||||| ||| ||| || |||| |||| | |||| ||| ||||| || |
|
|
| T |
31529336 |
ttgcatttagagatgacactaagcttaagaaaggtgaatctatagcacctgaactccttcgtgctatcgaagcctctcggactttcattgttgtcttctc |
31529237 |
T |
|
| Q |
102 |
aaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtgttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgat |
201 |
Q |
| |
|
||| ||||| |||| |||||||||||||||| |||||| |||||||||| ||| || ||| ||| ||| |||||| ||||| ||||||||| |
|
|
| T |
31529236 |
aaacaactatgcttcctcaacttggtgcttgcgggaattgcaatacatccttcattgcgtacaactttctggaaaacgtgttctccctgttttctatgat |
31529137 |
T |
|
| Q |
202 |
gttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagac |
282 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||| ||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
31529136 |
gttgatccttccgaggtgcgaaagcaaagtgggagttataaaaaagcatttgcccaacatgaggaaagattcaaacaagac |
31529056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 31020676 - 31020525
Alignment:
| Q |
1 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgt |
100 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||||||||||||| |||| || ||| ||| ||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
31020676 |
tttgcatttagagacgacgctaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctct |
31020577 |
T |
|
| Q |
101 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcct |
152 |
Q |
| |
|
| || ||||| ||| |||||||||||||||| |||||||| | ||||||| |
|
|
| T |
31020576 |
ccaaaaactattcttcctcaacttggtgcttgcgagaattggtacacatcct |
31020525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 31151176 - 31151038
Alignment:
| Q |
5 |
catttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaa |
104 |
Q |
| |
|
|||| |||||||| ||||| || | ||||||||||||||||||||||||||| ||| |||||||||| |||||| |||| |||| ||| || || || |
|
|
| T |
31151176 |
cattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaa |
31151077 |
T |
|
| Q |
105 |
gaactacgctttctcaacttggtgcttgaaagaattgga |
143 |
Q |
| |
|
|||||| |||| |||| |||||| ||| ||||||||| |
|
|
| T |
31151076 |
gaactatgcttcctcagtttggtgtttgcgagaattgga |
31151038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 31160077 - 31159927
Alignment:
| Q |
2 |
ttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtc |
101 |
Q |
| |
|
||||||| |||||||| |||| || | |||||||||||||||||||| || ||| ||||||||||||||| || ||||||| ||| |||| || |
|
|
| T |
31160077 |
ttgcattcagggatgattctaacctgaagaaaggtgaatccatagcacccgagctccttcatgcaattgaagcctcaaaggtttttattgtactcttctc |
31159978 |
T |
|
| Q |
102 |
aaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcct |
152 |
Q |
| |
|
||| ||||| |||| |||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
31159977 |
aaaaaactatgcttcctcaacatggtgcttgcgagagttggaatacatcct |
31159927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 31482160 - 31482278
Alignment:
| Q |
34 |
ggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaagaactacgctttctcaacttggtgcttga |
133 |
Q |
| |
|
|||| |||||||| ||| | |||||||| ||||||||||| |||||| ||||| | | ||||||||| |||| || |||| |||||||||||||||| |
|
|
| T |
31482160 |
ggtgcatccatagaacccgcactctttcgtgcaattgaagtctctcagattttcatcgtggtcttgtctaagagttatgcttcctcaacttggtgcttgc |
31482259 |
T |
|
| Q |
134 |
aagaattggaatacatcct |
152 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
31482260 |
gtgaattggtatacatcct |
31482278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 33412721 - 33412437
Alignment:
| Q |
3 |
tgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtca |
102 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| ||||| |||||| ||| ||| |||||| ||||| |||||||||||||| || ||||| ||| |
|
|
| T |
33412721 |
tgcatttagggatgacacaaatcttaaaaaaggtgaagtcataggacctgagctccttcgtgcaatcgaaggatctcaggttttcgtcgcagtcttttca |
33412622 |
T |
|
| Q |
103 |
aagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtg-ttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgat |
201 |
Q |
| |
|
| |||||| |||| |||||| |||||| || ||||||| ||| | || ||||| |||||||| | | || |||| | ||||| ||||| || |||||| |
|
|
| T |
33412621 |
aggaactatgcttcctcaacatggtgcctgcaagaattagaaaagat-ctgtgaatgtgttcagggacctgaaaaacacgttcttcctgttttttatgat |
33412523 |
T |
|
| Q |
202 |
gttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactctca |
287 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||| ||||| | |||||| |||||||||| |||||| |||||||| |||| |
|
|
| T |
33412522 |
attgatccttctgaggtgcggaagcaaagtgggatttattgtgaatcttttgtcaaacatgaacaaagattccaacaagaccctca |
33412437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 33288378 - 33288087
Alignment:
| Q |
3 |
tgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtca |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| ||||| ||||| || |||||||||||||| || || ||| |
|
|
| T |
33288378 |
tgcatttagggatgacaccaatcttcaaaaaggtgaatccataggacctgagctccttcgagcaatcgaaggatcccaggttttcgttgcagtattctca |
33288279 |
T |
|
| Q |
103 |
aagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtg-ttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgat |
201 |
Q |
| |
|
| ||||| |||| |||||| ||||||||| | ||||| ||| | || |||| |||||||| | ||| | ||| | |||| || || ||||||||| |
|
|
| T |
33288278 |
agaaactatgcttcctcaacatggtgcttgcaggaattagaaaagat-atgtgaatgtgttcatgtatcaagaaaacacattcttccagttttctatgat |
33288180 |
T |
|
| Q |
202 |
gttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactctcaaatggtg |
294 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| ||||||| ||| | ||||||||| | |||| ||||||||||||| |||||| |
|
|
| T |
33288179 |
gttgatccttctgaggtgcgaaagcaaagtgggatttatggtgaagcctttaccatacatgaacaaacattccaacaagactctcagatggtg |
33288087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 33060355 - 33060076
Alignment:
| Q |
6 |
atttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaag |
105 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||| ||||| |||||| || |||| |||||| ||| |||||||||| ||||||| |||| |||||| |
|
|
| T |
33060355 |
atttcgggatgtcattaatcttcaaaaaggtgaatgcataggacctgagctttttcgtgcaatcgaaatatctcaggtttacgttgcgatcttctcaaag |
33060256 |
T |
|
| Q |
106 |
aactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtgt-tgtgttcaagcatctaaaaagtatgttctacctgtgttctatgatgtt |
204 |
Q |
| |
|
||||| |||| |||||| ||||||||| ||||||| ||| | || |||| || || | | || ||| ||||||| ||||| |||||||||||| |
|
|
| T |
33060255 |
aactatgcttcctcaacgtggtgcttgcaagaattagaaaagata-tgtgaatgcattaaggggtcgggaaaacatgttcttcctgttttctatgatgtt |
33060157 |
T |
|
| Q |
205 |
gatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactct |
285 |
Q |
| |
|
||||||||| |||||| ||||||| ||| |||||||||||||| |||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
33060156 |
gatccttctgaggtgcggaagcaaagtggaatttatagtgaagcttttgtcaaacatgaacaaagattccaacaagactct |
33060076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 33307291 - 33307009
Alignment:
| Q |
1 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| |||| |||||| ||| ||| ||||| ||||| |||| |||||| ||||| ||||| | |
|
|
| T |
33307291 |
tttgcatttcgggatgacactaatcttcaaaagggtgaatctatagaacctgagctccttcgagcaatcgaaggatctcgggtttttgttgcagtcttct |
33307192 |
T |
|
| Q |
101 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgt-gttgtgttcaagcatctaaaaagtatgttctacctgtgttctatg |
199 |
Q |
| |
|
||| |||||| |||| |||||| |||||| || ||||||| || | || ||| || ||||| ||| | ||| || |||| ||||| || |||| |
|
|
| T |
33307191 |
caaggaactatgcttcctcaacatggtgcctgcaagaattagagaagat-atgtaaatgcgttcagagatccagaaaacatattcttcctgttttttatg |
33307093 |
T |
|
| Q |
200 |
atgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagact |
283 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||| ||||||| |||||| |||||||||| |||||| ||||||||| |
|
|
| T |
33307092 |
atgttgatccttctgtggttcgaaagcaaagtgggatttattgtgaagcctttgtcaaacatgaacaaagattccaacaagact |
33307009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 33361292 - 33361019
Alignment:
| Q |
12 |
ggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaagaactac |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| || ||| ||| ||||| ||||| ||||||||||| ||||| |||| |||| ||||| |
|
|
| T |
33361292 |
ggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttttgttgcattcttttcaagaaactat |
33361193 |
T |
|
| Q |
112 |
gctttctcaacttggtgcttgaaagaattggaatacatcctgtgt-tgtgttcaagcatctaaaaagtatgttctacctgtgttctatgatgttgatcct |
210 |
Q |
| |
|
|||| |||||| ||||| ||| ||||||| ||| | || |||| || || | | ||| ||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
33361192 |
gcttcctcaacatggtgtttgcaagaattagaaaagata-tgtgaatgcattaagggatcaggaaaacatgttcttcctgttttctatgatgttgatcct |
33361094 |
T |
|
| Q |
211 |
tctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactct |
285 |
Q |
| |
|
||| |||||| ||||||| || ||||||||||||||| |||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
33361093 |
tctgaggtgcggaagcaaagtgagatttatagtgaagcttttgtcaaacatgaacaaagattccaacaagactct |
33361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 33390857 - 33390585
Alignment:
| Q |
22 |
aatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaagaactacgctttctcaa |
121 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| |||| ||||| |||||||||| |||||||| || |||| ||||| |||||||||| |
|
|
| T |
33390857 |
aatcttcaaaaaggtgaatccataggacctgaacttcttcaatcaatcgaaggatctcaggtttatgttgcggttttctcaagaaactatgctttctcaa |
33390758 |
T |
|
| Q |
122 |
cttggtgcttgaaagaattggaatacatcctgtgttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgatgttgatccttctttggtgcg |
221 |
Q |
| |
|
| ||||| ||| ||||| | || | || | ||||| |||| ||| |||| |||||| ||||| || |||||||||||||||||| ||| || |
|
|
| T |
33390757 |
catggtgtttgcaagaaatagagaagatttgggaatgtgtccaaggatccgaaaaacttgttcttcctgttttttatgatgttgatccttctgaggttcg |
33390658 |
T |
|
| Q |
222 |
aaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactctcaaatggtg |
294 |
Q |
| |
|
|||||||| ||| |||||| | |||| |||||| |||||||||| |||||| ||||| ||||||| |||||| |
|
|
| T |
33390657 |
aaagcaaagtggaatttatgataaagcttttgtcaaacatgaacaaagattccaacaaaactctcagatggtg |
33390585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 9169485 - 9169370
Alignment:
| Q |
179 |
atgttctacctgtgttctatgatgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaaca |
278 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| | |||||||||| ||||||||| | |
|
|
| T |
9169485 |
atgttcttcttgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttattgtgaagcatttgccaaacatgaacaaagattcaaata |
9169386 |
T |
|
| Q |
279 |
agactctcaaatggtg |
294 |
Q |
| |
|
||| ||||| |||||| |
|
|
| T |
9169385 |
agattctcacatggtg |
9169370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 33403416 - 33403137
Alignment:
| Q |
1 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgt |
100 |
Q |
| |
|
||||||||| | |||||||||||||||||| | ||||||||| ||| ||| || || ||| ||||| |||| | |||||||||||||| ||||| | |
|
|
| T |
33403416 |
tttgcatttcgagatgacactaatcttcaacagggtgaatccttagaacccgagcttcttcgagcaatcaaaggatttcaggttttcgttgtcgtctttt |
33403317 |
T |
|
| Q |
101 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtg-ttgtgttcaagcatctaaaaagtatgttctacctgtgttctatg |
199 |
Q |
| |
|
||| |||||| |||| |||||| |||||||| |||||||| || | || |||| || ||| | | ||| ||||| ||||| | ||||| ||||||| |
|
|
| T |
33403316 |
caaggaactatgcttcctcaacatggtgcttaaaagaattagagaagat-atgtgaatgcgttaagggatccaaaaaacatgttattcctgttttctatg |
33403218 |
T |
|
| Q |
200 |
atgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaag |
280 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||| |||||| ||||||| |||||| | |||||| | |||||| |||||| |
|
|
| T |
33403217 |
atgttgatccttctgaggttcgaaagcaaagtggtatttattgtgaagcctttgtcaagcatgaaaaaagattccaacaag |
33403137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 31566399 - 31566692
Alignment:
| Q |
1 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgt |
100 |
Q |
| |
|
|||| |||| ||||||| || ||||||||||||||||||||||||| ||||| || ||| ||||| |||| ||||| ||||| ||||| ||||| | |
|
|
| T |
31566399 |
tttgtatttcgggatgatacaaatcttcaaaaaggtgaatccatagggcctgagcttcttcgagcaatccaaggatctcatgtttttgttgccgtcttct |
31566498 |
T |
|
| Q |
101 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtgt-tgtgttcaagcatctaaaaagtatgttctacctgtgttctatg |
199 |
Q |
| |
|
||| || || |||| ||| || ||||||||| ||||||| || | || |||| || || | | |||| |||| ||||||| | ||| ||||||| |
|
|
| T |
31566499 |
caagaaattatgcttcctcgacatggtgcttgcaagaattagagaagatt-tgtgaatgcattgaggaatctgaaaaacatgttcttcttgttttctatg |
31566597 |
T |
|
| Q |
200 |
atgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagactctcaaatggtg |
294 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||||||| |||||| |||| | |||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
31566598 |
atgttgatccttctgaggttcgaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtg |
31566692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 33265676 - 33265407
Alignment:
| Q |
12 |
ggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaagaactac |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| || ||| ||| ||||| ||||| ||||| ||||| ||||||||||| |||| ||||| |
|
|
| T |
33265676 |
ggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaaggatctcaagtttttgttgcggtcttttcaataaactat |
33265577 |
T |
|
| Q |
112 |
gctttctcaacttggtgcttgaaagaattggaatacatcctgtg-ttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgatgttgatcct |
210 |
Q |
| |
|
|||| |||||| ||||| || ||||||| ||| | || |||| || ||| | | ||| ||| ||||||| || || ||||||||||||||||| |
|
|
| T |
33265576 |
gcttcctcaacatggtgtttacaagaattagaaaagat-atgtgaatgcgttaagggatcaggaaaacatgttcttccagttttctatgatgttgatccc |
33265478 |
T |
|
| Q |
211 |
tctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaaga |
281 |
Q |
| |
|
||| ||| ||||||||| |||||||||| ||||||| ||| || |||||||||| |||||| ||||||| |
|
|
| T |
33265477 |
tctgatgtgagaaagcaaagtgggatttatggtgaagcctttatcaaacatgaacaaagattccaacaaga |
33265407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 33274820 - 33274551
Alignment:
| Q |
12 |
ggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaagaactac |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| || ||| ||| ||||| ||||| ||||| ||||| ||||||||||| |||| ||||| |
|
|
| T |
33274820 |
ggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaaggatctcaagtttttgttgcggtcttttcaataaactat |
33274721 |
T |
|
| Q |
112 |
gctttctcaacttggtgcttgaaagaattggaatacatcctgtg-ttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgatgttgatcct |
210 |
Q |
| |
|
|||| |||||| ||||| || ||||||| ||| | || |||| || ||| | | ||| ||| ||||||| || || ||||||||||||||||| |
|
|
| T |
33274720 |
gcttcctcaacatggtgtttacaagaattagaaaagat-atgtgaatgcgttaagggatcaggaaaacatgttcttccagttttctatgatgttgatccc |
33274622 |
T |
|
| Q |
211 |
tctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaaga |
281 |
Q |
| |
|
||| ||| ||||||||| |||||||||| ||||||| ||| || |||||||||| |||||| ||||||| |
|
|
| T |
33274621 |
tctgatgtgagaaagcaaagtgggatttatggtgaagcctttatcaaacatgaacaaagattccaacaaga |
33274551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 33642070 - 33642185
Alignment:
| Q |
179 |
atgttctacctgtgttctatgatgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaaca |
278 |
Q |
| |
|
||||||| ||| | || |||||||||||||||||| ||| |||||||||| ||| |||||| | ||||| |||||| |||||||||| |||||| |||| |
|
|
| T |
33642070 |
atgttcttcctattttttatgatgttgatccttctgaggtacgaaagcaaagtggaatttattgggaagcttttgtcaaacatgaacaaagattccaaca |
33642169 |
T |
|
| Q |
279 |
agactctcaaatggtg |
294 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
33642170 |
agactttcaaatggtg |
33642185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 12781552 - 12781403
Alignment:
| Q |
3 |
tgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtca |
102 |
Q |
| |
|
|||||| || ||||||||||| ||| ||||||| |||| ||||||||| | ||||||| |||||||||| |||||||||| | ||| || || || |
|
|
| T |
12781552 |
tgcattcagagatgacactaaacttaaaaaaggcgaattcatagcacccggactctttagagcaattgaagcctctcaggtttacattgttgtattctct |
12781453 |
T |
|
| Q |
103 |
aagaactacgctttctcaacttggtgcttgaaagaattggaatacatcct |
152 |
Q |
| |
|
|||||||| |||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12781452 |
aagaactatgcttcctcaacttggtgtttgcgagaattggaatacatcct |
12781403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 12782293 - 12782154
Alignment:
| Q |
13 |
gatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaagaactacg |
112 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| | || ||| |||| ||||||||||| |||||||||||| ||| || || || || ||||| | |
|
|
| T |
12782293 |
gatgacactaatcttcaaaaaggtaattccatagcatccgacctcattcaagcaattgaaggctctcaggttttcattgttgtattctctaaaaactatg |
12782194 |
T |
|
| Q |
113 |
ctttctcaacttggtgcttgaaagaattggaatacatcct |
152 |
Q |
| |
|
||| ||||||||||| ||| |||||| | ||||||||| |
|
|
| T |
12782193 |
cttcttcaacttggtgtttgcgagaattagcatacatcct |
12782154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 12785742 - 12785593
Alignment:
| Q |
3 |
tgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtca |
102 |
Q |
| |
|
|||||| || ||||||||||| ||| |||||||||||| ||||||||| | ||||||| |||||||||| |||||| ||| | ||| || || || |
|
|
| T |
12785742 |
tgcattcagagatgacactaaacttaaaaaaggtgaattcatagcacccggactctttagagcaattgaagcctctcagctttacattgttgtattctct |
12785643 |
T |
|
| Q |
103 |
aagaactacgctttctcaacttggtgcttgaaagaattggaatacatcct |
152 |
Q |
| |
|
|||||||| |||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12785642 |
aagaactatgcttcttcaacttggtgtttgcgagaattggaatacatcct |
12785593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 17437964 - 17438245
Alignment:
| Q |
1 |
tttgcatttagggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgt |
100 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||| | |||| || ||| ||||| ||||| ||||||||||| |||||||| || | |
|
|
| T |
17437964 |
tttgcatttcgagatgacactaatcttcaaaaaggtgaatccataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttct |
17438063 |
T |
|
| Q |
101 |
caaagaactacgctttctcaacttggtgcttgaaagaattggaatacatcctgtgt-tgtgttcaagcatctaaaaagtatgttctacctgtgttctatg |
199 |
Q |
| |
|
||| |||| |||| |||||| ||||| ||| ||||||| ||| | || |||| || ||||| | | ||| ||||||| ||||| ||||||| |
|
|
| T |
17438064 |
caagatactatgcttcctcaacatggtgtttggaagaattagaaaagata-tgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatg |
17438162 |
T |
|
| Q |
200 |
atgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaacaagac |
282 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| |||||| |||||| |||||||||| |||||| |||||||| |
|
|
| T |
17438163 |
atgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagattccaacaagac |
17438245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 942 - 812
Alignment:
| Q |
10 |
agggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaagaact |
109 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||| |||||| ||| ||| |||| ||||| ||||||||||||||||| ||||| |||| |||| |
|
|
| T |
942 |
agggatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttgctgtcttatcaagaaact |
843 |
T |
|
| Q |
110 |
acgctttctcaacttggtgcttgaaagaatt |
140 |
Q |
| |
|
| |||| ||||| |||||| || ||||||| |
|
|
| T |
842 |
atgcttcttcaacatggtgcctgcaagaatt |
812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 774 - 665
Alignment:
| Q |
178 |
tatgttctacctgtgttctatgatgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaac |
277 |
Q |
| |
|
|||||||| ||| | ||||||| ||| ||||||||| ||| |||||||| |||||||||| | || | |||| | |||||||||| |||||||||| |
|
|
| T |
774 |
tatgttcttcctattttctatggtgtcgatccttctgaggtaaaaaagcaaagtgggatttattgggacgattttgccaaacatgaacaaagattcaaac |
675 |
T |
|
| Q |
278 |
aagactctca |
287 |
Q |
| |
|
||||| |||| |
|
|
| T |
674 |
aagaccctca |
665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 9703 - 9573
Alignment:
| Q |
10 |
agggatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgcggtcttgtcaaagaact |
109 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||| |||||| ||| ||| |||| ||||| ||||||||||||||||| ||||| |||| |||| |
|
|
| T |
9703 |
agggatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttgctgtcttatcaagaaact |
9604 |
T |
|
| Q |
110 |
acgctttctcaacttggtgcttgaaagaatt |
140 |
Q |
| |
|
| |||| ||||| |||||| || ||||||| |
|
|
| T |
9603 |
atgcttcttcaacatggtgcctgcaagaatt |
9573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 9535 - 9426
Alignment:
| Q |
178 |
tatgttctacctgtgttctatgatgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatgaacacagattcaaac |
277 |
Q |
| |
|
|||||||| ||| | ||||||| ||| ||||||||| ||| |||||||| |||||||||| | || | |||| | |||||||||| |||||||||| |
|
|
| T |
9535 |
tatgttcttcctattttctatggtgtcgatccttctgaggtaaaaaagcaaagtgggatttattgggacgattttgccaaacatgaacaaagattcaaac |
9436 |
T |
|
| Q |
278 |
aagactctca |
287 |
Q |
| |
|
||||| |||| |
|
|
| T |
9435 |
aagaccctca |
9426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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