View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19219_low_14 (Length: 301)
Name: NF19219_low_14
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_low_14 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 47601047 - 47601309
Alignment:
| Q |
20 |
tttaagaatattagaatattgaactattgtatttatacttgcatcttatcttggtcacgacttatcaaaaatgagtcagctcctaagcattctcttgctt |
119 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47601047 |
tttaagaatattagaatgtttaactattgtatttatacttgcatcttatcttggtcacgacttatcaaaaatgagtcagctcctaagcattctcttgctt |
47601146 |
T |
|
| Q |
120 |
ctttttctttgttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47601147 |
ctttttctttgttaggtgatgtactaattacagtcacattagccccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaac |
47601246 |
T |
|
| Q |
220 |
acctatatgcataccaggtttgtcgagtccaaaatatcgaagaggactatacactgtgatacc |
282 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47601247 |
acctatatgcataccaggtttatcgagtccaaaatatcgaagaggactatacactgtgatacc |
47601309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 47 - 282
Target Start/End: Complemental strand, 13393902 - 13393667
Alignment:
| Q |
47 |
tgtatttatacttgcatcttatcttggtcacgacttatcaaaaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaa |
146 |
Q |
| |
|
||||||| ||| ||||| |||||||||||| ||||||| | |||||| |||||||||| | |||| |||||||||| |||||||| ||||||||||||| |
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|
| T |
13393902 |
tgtatttgtacctgcattttatcttggtcatgacttataagaaatgaatcagctcctaggttttctattgcttctttctctttgttgggtgatgtactaa |
13393803 |
T |
|
| Q |
147 |
ttacagtcacattagcaccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttgtcgag |
246 |
Q |
| |
|
|||| || |||||||| ||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |
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|
| T |
13393802 |
ttactgttacattagctccaaaagcttttgcaaacttcacacccaagtgaccaagtccaccaagaccaacaatacctatattcataccaggcttgtcgag |
13393703 |
T |
|
| Q |
247 |
tccaaaatatcgaagaggactatacactgtgatacc |
282 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |
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|
| T |
13393702 |
tccaaaatatcgaagaggactatacacagtaatacc |
13393667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 13385691 - 13385442
Alignment:
| Q |
31 |
tagaatattgaactattgtattta-tacttgcatcttatcttggtcacgacttatcaaaaatgagtcagctcctaagcattctcttgcttctttttcttt |
129 |
Q |
| |
|
||||||||||||||||| | ||| ||| ||||| |||||||||||||||||||||| |||||| |||||||||||| |||| ||||||| |||||||| |
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|
| T |
13385691 |
tagaatattgaactatttttttttgtacctgcattttatcttggtcacgacttatcagaaatgaatcagctcctaagtgttcttttgcttccttttcttt |
13385592 |
T |
|
| Q |
130 |
gttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatatgc |
229 |
Q |
| |
|
| ||| |||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| | ||| |
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|
| T |
13385591 |
gctagcagatgtactaattacggtcacattagcaccaaaagctttggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacaccgacatga |
13385492 |
T |
|
| Q |
230 |
ataccaggtttgtcgagtccaaaatatcgaagaggactatacactgtgat |
279 |
Q |
| |
|
| ||||||||||||||||||||| |||| ||||||||| ||||| ||||| |
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|
| T |
13385491 |
agaccaggtttgtcgagtccaaagtatctaagaggactgtacacagtgat |
13385442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 92 - 279
Target Start/End: Original strand, 13419297 - 13419484
Alignment:
| Q |
92 |
gagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaacagcca |
191 |
Q |
| |
|
||||||||||| ||| |||| ||||||| |||||||||| ||| |||||||||||||| |||||||||||||| |||||||| ||||| || ||||||| |
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|
| T |
13419297 |
gagtcagctcccaagtgttctattgcttccttttctttgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttcacagcca |
13419396 |
T |
|
| Q |
192 |
tgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttgtcgagtccaaaatatcgaagaggactatacactgtgat |
279 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
13419397 |
tatggccaagtccaccaagaccaacaacacctatattcataccaggcttgtcgagttcaaaatgtcgaagaggactatacactgtgat |
13419484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 72 - 270
Target Start/End: Original strand, 13412932 - 13413130
Alignment:
| Q |
72 |
ggtcacgacttatcaaaaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagcaccaaaagc |
171 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||||| |||| ||||||| |||||||||||||| |||||||||||||| || ||||||||||| ||||| |
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|
| T |
13412932 |
ggtcactacttatcagaaatgaatcagctcctaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagc |
13413031 |
T |
|
| Q |
172 |
tttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttgtcgagtccaaaatatcgaagaggactata |
270 |
Q |
| |
|
||| ||||| || |||||||| || |||||||||||||||||||||||||||||||| | |||||| || |||||||||||| |||||||||||||||| |
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|
| T |
13413032 |
tttggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatatgtaaaccaggcttatcgagtccaaaaaatcgaagaggactata |
13413130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 278
Target Start/End: Original strand, 13446848 - 13447034
Alignment:
| Q |
92 |
gagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaacagcca |
191 |
Q |
| |
|
||||| ||||||||| |||| ||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
13446848 |
gagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacggtcactttagcaccaaaagctttagcaaatttcacagcca |
13446947 |
T |
|
| Q |
192 |
tgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttgtcgagtccaaaatatcgaagaggactatacactgtga |
278 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
13446948 |
tatgaccaagtccaccaagaccaacaactcctatattcataccaggcttgtcgagtccaaaatgtcgaagaggactatacactgtga |
13447034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 13389511 - 13389263
Alignment:
| Q |
31 |
tagaatattgaactattgtatttatacttgcatcttatcttggtcacgacttatcaaaaatgagtcagctcctaagcattctcttgcttctttttctttg |
130 |
Q |
| |
|
||||| ||||||| ||| | ||| ||| ||||| || ||||||||||||||||||| |||||| || ||||||||| |||| |||||||||| |||||| |
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|
| T |
13389511 |
tagaaaattgaacaattttttttgtacctgcattttctcttggtcacgacttatcagaaatgaatcggctcctaagtgttctattgcttctttctctttg |
13389412 |
T |
|
| Q |
131 |
ttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatatgca |
230 |
Q |
| |
|
|| |||||||||||||| || || ||| | |||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||| | | |
|
|
| T |
13389411 |
ttgggtgatgtactaatcactgttacaatcgcaccaaatgctttggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacctatacgaa |
13389312 |
T |
|
| Q |
231 |
taccaggtttgtcgagtccaaaatatcgaagaggactatacactgtgat |
279 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||| ||||| ||||| |
|
|
| T |
13389311 |
gaccaggtttatcgagtccataatatctaagaggactgtacacagtgat |
13389263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 92 - 278
Target Start/End: Original strand, 13426188 - 13426374
Alignment:
| Q |
92 |
gagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaacagcca |
191 |
Q |
| |
|
|||||||||||||| |||| | ||||| ||||||||| |||| |||||||||||||| || |||||||||||||||||||| || || || ||||||| |
|
|
| T |
13426188 |
gagtcagctcctaaatgttctatcgcttccttttctttgctaggcgatgtactaattactgttacattagcaccaaaagctttggcgaatttcacagcca |
13426287 |
T |
|
| Q |
192 |
tgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttgtcgagtccaaaatatcgaagaggactatacactgtga |
278 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
13426288 |
tatgaccaagtccaccaagaccaacaacgcctatattcataccaggcttgtcgagttgaaaatgacgaagaggactatacactgtga |
13426374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 74 - 270
Target Start/End: Original strand, 13453783 - 13453979
Alignment:
| Q |
74 |
tcacgacttatcaaaaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagcaccaaaagctt |
173 |
Q |
| |
|
||||| ||||| | ||||||||| |||| |||| |||| |||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
13453783 |
tcacggcttattagaaatgagtccgctcgtaagtgttctaatgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaagctt |
13453882 |
T |
|
| Q |
174 |
tagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttgtcgagtccaaaatatcgaagaggactata |
270 |
Q |
| |
|
| || || || || ||||| || ||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
13453883 |
tggcgaatttcacggccatatggccaagtccaccaagaccaacaacacctatattcatatcaggcttgtcgagtccaaaatgtcgaagaggactata |
13453979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 13378832 - 13378997
Alignment:
| Q |
89 |
aatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaacag |
188 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| || | ||||||||| || ||||| | ||||| || ||| ||||||| ||||| || ||||| |||| |
|
|
| T |
13378832 |
aatgagtcagctcctaagcgttcaatggcttccttctttttgttaggagaagtacttaccacagttaccttaacaccaaaggctttggcgaacttcacag |
13378931 |
T |
|
| Q |
189 |
ccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttgtcgagtccaaaat |
254 |
Q |
| |
|
|||| ||||| | ||||||||||||||| ||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
13378932 |
ccatatgacctaatccaccaagaccaaccacacctatatgcagtccaggtttgtcaaatccaaaat |
13378997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 13373035 - 13373203
Alignment:
| Q |
88 |
aaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaaca |
187 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| || | ||||||||| || || || || || || |||||||||||||||||||| | ||| || ||| |
|
|
| T |
13373035 |
aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttggtaaatttcaca |
13373134 |
T |
|
| Q |
188 |
gccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttgtcgagtccaaaatat |
256 |
Q |
| |
|
||||| ||||| | ||||||||||||||| ||||| | ||| | |||||| |||| |||||||||||| |
|
|
| T |
13373135 |
gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatat |
13373203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 28430798 - 28430701
Alignment:
| Q |
127 |
tttgttaggtgatgtactaattacagtcacattagcaccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacaccta |
224 |
Q |
| |
|
||||||||| || || ||||| || || || ||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
28430798 |
tttgttaggagaagtgctaatcactgttaccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacaccta |
28430701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 8354168 - 8354109
Alignment:
| Q |
163 |
accaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacc |
222 |
Q |
| |
|
|||||| |||||| |||| || |||||||||||||||||||| || | |||||||||||| |
|
|
| T |
8354168 |
accaaatgctttaccaaattttacagccatgtgaccaagtcctcccaaaccaacaacacc |
8354109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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