View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_low_2 (Length: 651)
Name: NF19219_low_2
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 38 - 401
Target Start/End: Complemental strand, 34329658 - 34329289
Alignment:
| Q |
38 |
ttctcatctgcaacgcactcgtcgtactctgctgcggtgtaccggagaaatagcagagactcgtttgatgaatgatcagtgacgacggcgatgacggact |
137 |
Q |
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| T |
34329658 |
ttctcaactgcaacgcaatcgtcgtactctgctgcggtgtaccggagaaacagcagagactcgtttgatgaaggatcagtgacgacggcgatgacggact |
34329559 |
T |
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| Q |
138 |
gttacgaaccgagggaagcgagtattgactggagtgggacaacggcggaaggatacgacgaaagtagcatcgccgccgtgtcagtcggcggctacggtgg |
237 |
Q |
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| T |
34329558 |
gttacgaaccgagtgaagcgagtattgactggagtgtgacgacggcggaaggatacgacgaaagtagcatcgccgccgtgtcagtcggtgggtacggtgg |
34329459 |
T |
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| Q |
238 |
t------ggcggtagcgtgacggcggagcattggaagagaaaaggcgggaacggtttgttagtgagctgtcggtgtgagaaagcggttagtgtgggtcca |
331 |
Q |
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| T |
34329458 |
tggtggcggcggtagcgtgacggcggagcattggaagagaaaaggcgggaacggtttgttagtgagctgtcggtgtgagaaagcggttagtgtgggtcca |
34329359 |
T |
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| Q |
332 |
cagccagtgaaatgtgagggacaaagaggggccacgtcagcatggaaacaagtgaatggtggtggtgtaa |
401 |
Q |
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| T |
34329358 |
cagccagtgaaatgtgagggacaaagaggggccacgtcagcatggaaacaagtgaatggtggtggtgtaa |
34329289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 419 - 647
Target Start/End: Complemental strand, 34329295 - 34329067
Alignment:
| Q |
419 |
ggtgtaaatattaataaaccaccacttgctaggtcttctcattctcatcaaagaaatagcaacaatacacctcgtgttacttcttttgcttttgcgacat |
518 |
Q |
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| T |
34329295 |
ggtgtaaatattaataaaccaccacttgctaggtcttctcattctcatcaaagaaatagcaacaatacacctcgtgttacttcttttgcttttgcgacat |
34329196 |
T |
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| Q |
519 |
agttgtttcattttgatgttgatgcatgcacccttcaaatgttacattgcaagggtcatgnnnnnnnnnnnnnnnnnnattcaatttcaaaggtctcaaa |
618 |
Q |
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| T |
34329195 |
agttgtttcattttgatgttgatgcatgcacccttcaaatgttacattgcaagggtcatgtttttttgttttttgtttattcaatttcaaaggtctcaaa |
34329096 |
T |
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| Q |
619 |
tagtgtgtgttttcttgtatattcttcga |
647 |
Q |
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| T |
34329095 |
tagtgtgtgttttcttgtatttttttcga |
34329067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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