View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_low_23 (Length: 248)
Name: NF19219_low_23
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 10448304 - 10448092
Alignment:
| Q |
17 |
agttaggcagattatttcttcnnnnnnnngttagacagattatttccaaaaccgccttcaaattctatggcggccgatatcactttcttcagctggaaac |
116 |
Q |
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| T |
10448304 |
agttaagcagattatttcttcaaaaaaaagttagacagataatttccgaaacaaccttcaaattctatggcggccgatatcactttcttcagctggaaac |
10448205 |
T |
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| Q |
117 |
gctacaaggtaataatattatttgtttcttgcttgcattattcatggaatggtagtaagtaaactgatatatgcttgggttaatattgtttatgttattt |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10448204 |
actacaaggtaataatattattcctttcttgcttgcattattcatggaatggtagtaagtaaactgctatatgcttgggttaatattgtttatgttattt |
10448105 |
T |
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| Q |
217 |
ctttctttgcaga |
229 |
Q |
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||||||||||||| |
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| T |
10448104 |
ctttctttgcaga |
10448092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 33577076 - 33577191
Alignment:
| Q |
46 |
gttagacagattatttccaaaaccgccttcaaattctatggcggccgatatcactttcttcagctggaaacgctacaaggtaataatattatttgtttct |
145 |
Q |
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|||||||||||||||||| ||||| | ||| ||||| || ||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
33577076 |
gttagacagattatttccgaaaccacgttctaattcgatcgcggctgatatcactttcttcaactggaaacactacaaggtaataatattattcttttct |
33577175 |
T |
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| Q |
146 |
tgcttgcattattcat |
161 |
Q |
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| T |
33577176 |
tgcctgcattattcat |
33577191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 33577661 - 33577796
Alignment:
| Q |
86 |
gcggccgatatcactttcttcagctggaaacgctacaaggtaataatattatttgtttcttgcttgcattattcatggaatggtagtaagtaaactgata |
185 |
Q |
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||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||| |
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| T |
33577661 |
gcggctgatatcactttcttcaactggaaacactacaaggtaataatattattcttttcttacctgcattattcat------tccgtaagtaaactgata |
33577754 |
T |
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| Q |
186 |
tatgcttgggttaatattg---tttatgttatttctttcttt |
224 |
Q |
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||| ||| ||||||||||| |||||||||||||||||||| |
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| T |
33577755 |
tattcttcggttaatattgttttttatgttatttctttcttt |
33577796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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