View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_low_24 (Length: 247)
Name: NF19219_low_24
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 14674689 - 14674481
Alignment:
| Q |
14 |
agattcttcatatgtgcaatatttcttttattaactatgggcttaggatcatttttgatatggaagtatgaagaattcaataaatcaagaaatgagaggg |
113 |
Q |
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| T |
14674689 |
agattcttcatatgtgcaatatttcttttattaactatgggcttaggatcatttttgatatggaagtatgaagaattcaataaatcaagaaatgagaggg |
14674590 |
T |
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| Q |
114 |
tagaagaaggacggcgagaaacggttgggttgctatatgaagaagaagcatggaatacatgtgttaaaggaattcatcctaattggttgcttgcttacag |
213 |
Q |
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| T |
14674589 |
tagaagaaggacggcgagaaacggttgggttgctatatgaagatgaagcatggaatacatgtgttaaaggaattcatcctaattggttgctttcttacag |
14674490 |
T |
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| Q |
214 |
aataatttc |
222 |
Q |
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| T |
14674489 |
aataatttc |
14674481 |
T |
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Back To:
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 29467004 - 29466929
Alignment:
| Q |
147 |
tatatgaagaagaagcatggaatacatgtgttaaaggaattcatcctaattggttgcttgcttacagaataatttc |
222 |
Q |
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| T |
29467004 |
tatatgaagatgaagcttggaatacttgtgttaaaggaattgatcctatatggttacttgtttatagaatcatttc |
29466929 |
T |
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