View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_low_4 (Length: 501)
Name: NF19219_low_4
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 42133842 - 42133351
Alignment:
| Q |
1 |
ctcactcctcaacctgttcatttctgtacagtttttatttatgacccacaattatgtggtattagtgaatgcaattacattaatttgactattttcattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133842 |
ctcactcctcaacctgttcatttctgtacagtttttatttatgacccacaattatgtggtattagtgaatgcaattacattaatttgactattttcattc |
42133743 |
T |
|
| Q |
101 |
tactttttatgacagcgatgatgtagccttttcgctgagagactgcaaagatttaccttggctgtccaaatatcttatgtaagaatggaaatttgattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133742 |
tactttttatgacagcgatgatgtagccttttcgctgagagactgcaaagatttaccttggctgtccaaatatcttatgtaagaatggaaatttgattat |
42133643 |
T |
|
| Q |
201 |
gctcttaaagaacattttttcctaataacttatgttaannnnnnnattatttacataattgttaccatctccggtactattatgaagacaagtgttagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133642 |
gctcttaaagaacattttttcctaataacttatgttaatttttttattatttacataattgttaccatctccggtactattatgaagacaagtgttagca |
42133543 |
T |
|
| Q |
301 |
tctgttgtatgttggtccttgggggtggtctgtctatgtattacacatgtattaggctttgtattacctgttgcagcccacaaaagaggggcatctcagc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42133542 |
tctgttgtatgttggtccttgggggtggtctgtctatgtattacacatgtattaggccttgtattacctgttgcaacccacaaaagaggggcatctcagc |
42133443 |
T |
|
| Q |
401 |
cacactattatgacactcttgtatctttcacatatcagaattaataatacagtttattatttcaattttctcagtttctccttttgtctctg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133442 |
cacactattatgacactcttgtatctttcacatatcagaattaataatacagtttattatttcaattttctcagtttctccttttgtctctg |
42133351 |
T |
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