View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_low_6 (Length: 441)
Name: NF19219_low_6
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 36 - 427
Target Start/End: Original strand, 29654515 - 29654906
Alignment:
| Q |
36 |
acaaaagataaaataagtctcaccaaaaaccacagtatatcaaacaaacattgtaaaatgattaatttaatgaaaagtattgtgagagatacttaaaaat |
135 |
Q |
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|||||||||||||||||||||||||| || | ||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||| |
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| T |
29654515 |
acaaaagataaaataagtctcaccaataaataaagtatgtcaaacaaacattataaaacgattaatttaatgaaaaatattgtgaggtatacttaaaaat |
29654614 |
T |
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| Q |
136 |
ataatgtttatgtgagactttaaatcttaaagaccccnnnnnnnttctctataataagatatttattagatacgagatatggttaaaaccatattcttac |
235 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29654615 |
ataatgtttatgtgagactttaaatcttaaagaccccaaaaaaattctctataataagatatttattagatacgagatatggttaaaaccatattcttac |
29654714 |
T |
|
| Q |
236 |
gcaacacgtcacacaccccaaaacacgctgctatataaaatcatcattacgtgctaaattacacacccgtagcgcacggtcttatccttcacaccccaaa |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29654715 |
gcaacacgtcacacaccccaaaacacgctgctatataaaatcatcattacgtgctaaattacacacccgtagcgcacggtcttatccttcacaccccaaa |
29654814 |
T |
|
| Q |
336 |
acactgctctataaaataaaaaagcttcaaacttcgtcactccattctctactcaacactctctctgaggtaagttttctttcgttcttctt |
427 |
Q |
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| T |
29654815 |
acactactatataaaataaaaaagcttcaaacttcgtcactccattctctactcaacactctctctgaggtaagttttctttcgttcttctt |
29654906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 8572083 - 8572123
Alignment:
| Q |
76 |
caaacaaacattgtaaaatgattaatttaatgaaaagtatt |
116 |
Q |
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| T |
8572083 |
caaacgaacattgtaaaattattaatttaatgaaaaatatt |
8572123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 45282981 - 45283020
Alignment:
| Q |
75 |
tcaaacaaacattgtaaaatgattaatttaatgaaaagta |
114 |
Q |
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| T |
45282981 |
tcaaacaaccattgtaaaatgattaatttaatgaaaagta |
45283020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 1208189 - 1208235
Alignment:
| Q |
69 |
agtatatcaaacaaacattgtaaaatgattaatttaatgaaaagtat |
115 |
Q |
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||||| |||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
1208189 |
agtatgtcaaacaaacattgcaaaataattaattaaatgaaaagtat |
1208235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 38488226 - 38488267
Alignment:
| Q |
75 |
tcaaacaaacattgtaaaatgattaatttaatgaaaagtatt |
116 |
Q |
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||||||||| |||| |||||||||||||||||||||| |||| |
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| T |
38488226 |
tcaaacaaatattgaaaaatgattaatttaatgaaaaatatt |
38488267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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