View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_low_8 (Length: 388)
Name: NF19219_low_8
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 11891517 - 11891156
Alignment:
| Q |
12 |
tggactggtggttttttcagttcgatcaacttttgcgatcatatta-tataaatttataatataaaaatctgctatcattaattatgttttttaataaca |
110 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11891517 |
tggactagtggttttttcagttcgatcaacctttgcgatcatattaatagaaatttataatataaaaatctgctatcattaattatgttttttaataaca |
11891418 |
T |
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| Q |
111 |
aaaagaacaagaaaaatggtgattgcccatctttgtctagtagtcaatttacatagtctccatcatattaactattgttggtagaaagagttaaggtcac |
210 |
Q |
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| T |
11891417 |
aaaagaacaagaaaaatggtgattgcccatctttgtctagtagtcaatttacatagtcgccatcatattaactattgttagtagaaagagttaaggtcac |
11891318 |
T |
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| Q |
211 |
ctcatttcaagtagggttagtttaaacatggatcatatcctttcaagtggtggtcctctcnnnnnnnnttgttagtacaaagagttaaggtcacctcctt |
310 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11891317 |
ctcctttcaagtagggttagtttaaagatggatcatatcctttcaagtggtggtcctctc-aaaaaaattgttagtacaaagagttaaggtcacctcctt |
11891219 |
T |
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| Q |
311 |
tcaagtagggttaaaatactagagttnnnnnnntt-tcacaaaggagaatttagtaacatttg |
372 |
Q |
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||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |
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| T |
11891218 |
tcaagtagggttaaaatactacagttaaaaatcttctcacaaaggagaatttagtaacatttg |
11891156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 11897183 - 11896822
Alignment:
| Q |
12 |
tggactggtggttttttcagttcgatcaacttttgcgatcatatta-tataaatttataatataaaaatctgctatcattaattatgttttttaataaca |
110 |
Q |
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| T |
11897183 |
tggactagtggttttttcagttcgatcaacctttgcgatcatattaatagaaatttataatataaaaatctgctatcattaattatgttttttaataaca |
11897084 |
T |
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| Q |
111 |
aaaagaacaagaaaaatggtgattgcccatctttgtctagtagtcaatttacatagtctccatcatattaactattgttggtagaaagagttaaggtcac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
11897083 |
aaaagaacaagaaaaatggtgattgcccatctttgtctagtagtcaatttacatagtcgccatcatattaactattgttagtagaaagagttaaggtcac |
11896984 |
T |
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| Q |
211 |
ctcatttcaagtagggttagtttaaacatggatcatatcctttcaagtggtggtcctctcnnnnnnnnttgttagtacaaagagttaaggtcacctcctt |
310 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11896983 |
ctcctttcaagtagggttagtttaaagatggatcatatcctttcaagtggtggtcctctc-aaaaaaattgttagtacaaagagttaaggtcacctcctt |
11896885 |
T |
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| Q |
311 |
tcaagtagggttaaaatactagagttnnnnnnntt-tcacaaaggagaatttagtaacatttg |
372 |
Q |
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||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |
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| T |
11896884 |
tcaagtagggttaaaatactacagttaaaaatcttctcacaaaggagaatttagtaacatttg |
11896822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 11907984 - 11907925
Alignment:
| Q |
117 |
acaagaaaaatggtgattgcccatctttgtctagtagtcaatttacatagtctccatcat |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11907984 |
acaagaaaaatggtgattgcccatctttgtctagtagtcaatttacatagtctccatcat |
11907925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 11903562 - 11903526
Alignment:
| Q |
300 |
gtcacctcctttcaagtagggttaaaatactagagtt |
336 |
Q |
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| T |
11903562 |
gtcacctactttcaagtagggttaaaatactagagtt |
11903526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 11907610 - 11907542
Alignment:
| Q |
173 |
tcatattaactattgttggtagaaagagttaaggtcacctcatttcaagtagggttagtttaaacatgg |
241 |
Q |
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||||||| ||||| ||| |||||||||||||||||||| || |||| |||| |||||| |||| |||| |
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| T |
11907610 |
tcatatttactatggttagtagaaagagttaaggtcacttcctttcttgtagagttagtataaagatgg |
11907542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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