View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19219_low_9 (Length: 375)

Name: NF19219_low_9
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19219_low_9
NF19219_low_9
[»] chr5 (3 HSPs)
chr5 (1-306)||(31681615-31681923)
chr5 (324-375)||(31680297-31680348)
chr5 (301-333)||(31681562-31681594)
[»] chr7 (1 HSPs)
chr7 (27-222)||(40781195-40781396)
[»] chr3 (12 HSPs)
chr3 (221-306)||(2808968-2809053)
chr3 (309-346)||(2820195-2820232)
chr3 (309-354)||(2854279-2854324)
chr3 (309-351)||(2808897-2808939)
chr3 (309-354)||(2837069-2837114)
chr3 (219-302)||(2760919-2761002)
chr3 (219-306)||(2770761-2770848)
chr3 (255-306)||(2792015-2792066)
chr3 (231-306)||(2820261-2820336)
chr3 (312-346)||(2760849-2760883)
chr3 (309-354)||(2750622-2750667)
chr3 (301-346)||(5414520-5414565)
[»] scaffold0691 (1 HSPs)
scaffold0691 (309-354)||(4618-4663)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 31681923 - 31681615
Alignment:
Q  1 tatgtacattatggcttaaaaagaatggtggcggacagcaatttcgctttactttcgttggtggcttccttggtggaggcttccccggcggcggtggt-- 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||      
T  31681923 tatgtacattatggcttaaaaagaatggtggcggacagcaatttcactttacttttgttggtggcttccttggtggaggctttcccggcggcggtggtgg 31681824  T
Q  99 -tacgaatttcattttttattggaaaagtcttaatccttgaatttttcttagggaaagctacagccttgatttcctcaagggaccacatctataatgttg 197  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31681823 ttacgaatttcattttttattggaaaagtcttaatccttgaatttttcttagggaaagctatagccttgatttcctcaagggaccacatctataatgttg 31681724  T
Q  198 actaatcacttgctaacggttgttggggtggcgatgagacagagttcaaattaactgtttcatcttcaactattgcagtgatattaagattttcaaggtg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31681723 actaatcacttgctaacggttgttggggtggcgatgagacagagttcaaattaactgtttcatcttcaactattgcagtgatattaagattttcaaggtg 31681624  T
Q  298 tttcatttc 306  Q
    |||| ||||    
T  31681623 tttcgtttc 31681615  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 324 - 375
Target Start/End: Complemental strand, 31680348 - 31680297
Alignment:
Q  324 tgccttaaacctaacctccttaattgccttattcatgtgaagattctctcta 375  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31680348 tgccttaaacctaacctccttgattgccttattcatgtgaagattctctcta 31680297  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 31681594 - 31681562
Alignment:
Q  301 catttccgtgttctcttcttacatgccttaaac 333  Q
    |||| ||||||||||||||||||||||||||||    
T  31681594 cattcccgtgttctcttcttacatgccttaaac 31681562  T

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Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 40781195 - 40781396
Alignment:
Q  27 ggtggcggacagcaatttcgctttactttcgttggtggcttccttggtggaggcttccccgg------cggcggtggttacgaatttcattttttattgg 120  Q
    ||||| ||||||||||||| ||||||||| | ||||||||||| |||||||||||| |||||      |||||| ||||||||||||||||||| |||||    
T  40781195 ggtggtggacagcaatttcactttacttttgatggtggcttccctggtggaggctttcccggaggcggcggcggcggttacgaatttcatttttgattgg 40781294  T
Q  121 aaaagtcttaatccttgaatttttcttagggaaagctacagccttgatttcctcaagggaccacatctataatgttgactaatcacttgctaacggttgt 220  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40781295 aaaagtcttaatccttaaatttttcttagggaaagctatagccttgatttcctcaagggaccacatctataatgttgactaatcacttgctaacggttgt 40781394  T
Q  221 tg 222  Q
    ||    
T  40781395 tg 40781396  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 2809053 - 2808968
Alignment:
Q  221 tggggtggcgatgagacagagttcaaattaactgtttcatcttcaactattgcagtgatattaagattttcaaggtgtttcatttc 306  Q
    |||||||| || |||||  ||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  2809053 tggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtgatattaagattttcaaggtgtttcatttc 2808968  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 2820232 - 2820195
Alignment:
Q  309 tgttctcttcttacatgccttaaacctaacctccttaa 346  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2820232 tgttctcttcttacatgccttaaacctaacctccttaa 2820195  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 2854279 - 2854324
Alignment:
Q  309 tgttctcttcttacatgccttaaacctaacctccttaattgcctta 354  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  2854279 tgttctcttcttacatgccttaaacctaaccttcttaactgcctta 2854324  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 2808939 - 2808897
Alignment:
Q  309 tgttctcttcttacatgccttaaacctaacctccttaattgcc 351  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  2808939 tgttctcttctcacatgccttaaacctaacctccttaactgcc 2808897  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 2837069 - 2837114
Alignment:
Q  309 tgttctcttcttacatgccttaaacctaacctccttaattgcctta 354  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||||    
T  2837069 tgttctctttttacatgccttaaacctaacttccataattgcctta 2837114  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 2761002 - 2760919
Alignment:
Q  219 gttggggtggcgatgagacagagttcaaattaactgtttcatcttcaactattgcagtgatattaagattttcaaggtgtttca 302  Q
    ||||||| || ||||||||| | ||||| ||||   ||||||| ||| | |||| |||||||||||||| ||||||||||||||    
T  2761002 gttggggcggagatgagacaaaattcaagttaatgctttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttca 2760919  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 2770848 - 2770761
Alignment:
Q  219 gttggggtggcgatgagacagagttcaaattaactgtttcatcttcaactattgcagtgatattaagattttcaaggtgtttcatttc 306  Q
    |||||||||| ||||| | | ||||||| | || | ||||||| |||  |||||||  ||||||||||| ||||||||||||||||||    
T  2770848 gttggggtggggatgatatacagttcaagtcaagtatttcatcctcagatattgcacagatattaagatgttcaaggtgtttcatttc 2770761  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 2792066 - 2792015
Alignment:
Q  255 tttcatcttcaactattgcagtgatattaagattttcaaggtgtttcatttc 306  Q
    ||||||| |||  |||||||| ||||||||||| ||||||||||||||||||    
T  2792066 tttcatcctcagatattgcagagatattaagatattcaaggtgtttcatttc 2792015  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 2820336 - 2820261
Alignment:
Q  231 atgagacagagttcaaattaactgtttcatcttcaactattgcagtgatattaagattttcaaggtgtttcatttc 306  Q
    |||||||| | ||||| ||||  |||||||| ||| | || | |||||||||||||| ||||||||||||||||||    
T  2820336 atgagacaaaattcaagttaatggtttcatcctcaccaatggtagtgatattaagatcttcaaggtgtttcatttc 2820261  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 2760883 - 2760849
Alignment:
Q  312 tctcttcttacatgccttaaacctaacctccttaa 346  Q
    ||||||||||||||||||||||||||||| |||||    
T  2760883 tctcttcttacatgccttaaacctaaccttcttaa 2760849  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 2750667 - 2750622
Alignment:
Q  309 tgttctcttcttacatgccttaaacctaacctccttaattgcctta 354  Q
    ||||| |||||||||||| ||||||||||| ||||||| |||||||    
T  2750667 tgttcccttcttacatgctttaaacctaacttccttaactgcctta 2750622  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 5414565 - 5414520
Alignment:
Q  301 catttccgtgttctcttcttacatgccttaaacctaacctccttaa 346  Q
    |||| ||||||||||||||||||||| ||||||| ||| |||||||    
T  5414565 cattcccgtgttctcttcttacatgctttaaacccaacttccttaa 5414520  T

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Target: scaffold0691 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 4618 - 4663
Alignment:
Q  309 tgttctcttcttacatgccttaaacctaacctccttaattgcctta 354  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||    
T  4618 tgttctcttcttacatgccttaaacctaacttccttaactgcctta 4663  T

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