View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1921_high_1 (Length: 374)
Name: NF1921_high_1
Description: NF1921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1921_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 45365629 - 45365781
Alignment:
| Q |
209 |
agtgatgtaaatttgtagtttgtttggatggaagtttaccggcgtatcatttggatagaggatttggagctggtgaagacaattggcttctacaatttga |
308 |
Q |
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| T |
45365629 |
agtgatgtaaatttgtagtttgtttggatggaagtttaccggcgtatcatttggatagaggatttggagctggtgaagacaattggcttctacaatttga |
45365728 |
T |
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| Q |
309 |
ggtatattcatatttttctcattgttctatttaagttattttaaatgatatat |
361 |
Q |
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| T |
45365729 |
ggtatattcatatttttctcattgttctattgaagttattttaaatgatatat |
45365781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 209 - 356
Target Start/End: Original strand, 45382395 - 45382542
Alignment:
| Q |
209 |
agtgatgtaaatttgtagtttgtttggatggaagtttaccggcgtatcatttggatagaggatttggagctggtgaagacaattggcttctacaatttga |
308 |
Q |
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| T |
45382395 |
agtgatgtaaatttgtagtttgtttggatggaagtttaccggcgtatcatttggatagaggatttggagctggtgaagacaattggcttctacaatttga |
45382494 |
T |
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| Q |
309 |
ggtatattcatatttttctcattgttctatttaagttattttaaatga |
356 |
Q |
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| T |
45382495 |
ggtatattcatatttttctcattgttctgtttaagttattttaaatga |
45382542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 45365430 - 45365541
Alignment:
| Q |
10 |
attattctatctaatcacggtggagtcatggcgtgttcactcacaagaaccgaagaagctttatgtgaacatgacgctcgttaacaacgcacgtgaaacc |
109 |
Q |
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| T |
45365430 |
attattctatctaatcacggtggagtcatggcgtgttcactcacaagaaccgaagaagctttatgtgaacatgactctcgttaacaacgcacgcgaaacc |
45365529 |
T |
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| Q |
110 |
ggtgcttgtaag |
121 |
Q |
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| T |
45365530 |
ggtgcttgtaag |
45365541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 45382196 - 45382307
Alignment:
| Q |
10 |
attattctatctaatcacggtggagtcatggcgtgttcactcacaagaaccgaagaagctttatgtgaacatgacgctcgttaacaacgcacgtgaaacc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
45382196 |
attattctatctaatcacggtggagtcatggcgtgttcactcacaagaaccgaagaagctttatgtgaacatgactctcgttaacaacgcacgcgaaacc |
45382295 |
T |
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| Q |
110 |
ggtgcttgtaag |
121 |
Q |
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|||||||||||| |
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| T |
45382296 |
ggtgcttgtaag |
45382307 |
T |
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