View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1921_high_2 (Length: 340)
Name: NF1921_high_2
Description: NF1921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1921_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 5710695 - 5710364
Alignment:
| Q |
1 |
ccgaatatttctccagcagcaatataaatttgaatattttgatctatgtctagtgctttcagtattagagcagtttcctcaggtgttaacggacataaac |
100 |
Q |
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| T |
5710695 |
ccgaatatttctccagcagcaatataaatttgaatattttgatctatatctagtgctttcagtattagagcagtttcctcaggtgttaaaggacataaac |
5710596 |
T |
|
| Q |
101 |
cgtctttcctcttaagttcggaatttatgactttttccttccaccaaggataagcatatctaaaaaatacgattttccaaaatcacattcaaagagtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5710595 |
cgtctttcctcttaagttcggaatttatgactttttccttccaccaaggataagcatatctaaaaaatacgattttccaaaatcacattcaaagagtaaa |
5710496 |
T |
|
| Q |
201 |
caaaaatagatgctgcactgcataaacataggatttagttagttcattacctcattcttgtgagttcctcaacctcactgctatcacatccatgagtgca |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5710495 |
caaaaatagatgctgcaatgcataaacataggatttagttagttcattacctcattcttgtgagttcctcaacctcactgctatcacatccatgagtgca |
5710396 |
T |
|
| Q |
301 |
gccagagaaagccaacatatccatctcatatc |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5710395 |
gccagagaaagccaacatatccatctcatatc |
5710364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 24494801 - 24494892
Alignment:
| Q |
70 |
gcagtttcctcaggtgttaacggacataaaccgtctttcctcttaagttcggaatttatgactttttccttccaccaaggataagcatatct |
161 |
Q |
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| T |
24494801 |
gcagtctcctcgggtgttaacggacataaaccatcttttcttttcaaatcagaattaattattttttctttccaccaaggataagcatatct |
24494892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 45807331 - 45807175
Alignment:
| Q |
5 |
atatttctccagcagcaatataaatttgaatattttgatctatgtctagtgctttcagtattagagcagtttcctcaggtgttaacggacataaaccgtc |
104 |
Q |
| |
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||||||| ||||| ||||| || |||||||| |||||||| ||||| || || | ||| | || ||||| ||||| ||||||| ||||||||||| || |
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| T |
45807331 |
atatttcaccagctgcaatgtagatttgaatgttttgatcaatgtcaagagcccttagtgtaagggcagtctcctcgggtgttagaggacataaaccatc |
45807232 |
T |
|
| Q |
105 |
tttcctcttaagttcggaatttatgactttttccttccaccaaggataagcatatct |
161 |
Q |
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| | || || | || ||||| || | ||| || |||||||||||||| |||||||| |
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| T |
45807231 |
tcttcttttcaagtcagaattaattattttctctttccaccaaggataggcatatct |
45807175 |
T |
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