View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1921_low_1 (Length: 602)
Name: NF1921_low_1
Description: NF1921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1921_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 259 - 585
Target Start/End: Complemental strand, 44567429 - 44567101
Alignment:
| Q |
259 |
atgaagcaatgaagtactactaggaggaaggaaaaggcgtccttcaagattaacaaataaactaaataaagaacacaaacaca--taagctcaagggtgt |
356 |
Q |
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| T |
44567429 |
atgaagcaatgaagtactactaggaggaaggaaaaggcgtccttcaagattaacaaataaactaaataaagaacaaaaaaacaaataagctcaagggtgt |
44567330 |
T |
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| Q |
357 |
atcaaggtagctaatgtttctaattctgttgaacggctgttcgtcacaatatggagtaacaaaggtagatgcaaatgcaacaacagaatgataatagata |
456 |
Q |
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| T |
44567329 |
atcaaggtagctaatgtttctaattctgttgaacggctgttcgtcacaatatggagtaacaaaggtagatgcaaatgcaacaacagaatgataatagata |
44567230 |
T |
|
| Q |
457 |
cttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaacattttcggtt |
556 |
Q |
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| T |
44567229 |
cttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaacattttcggtt |
44567130 |
T |
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| Q |
557 |
agagttgttgatcccattccagtacccca |
585 |
Q |
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| T |
44567129 |
agagttgttgatcccattccagtacccca |
44567101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 44567687 - 44567494
Alignment:
| Q |
1 |
agtccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagac |
100 |
Q |
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| T |
44567687 |
agtccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagac |
44567588 |
T |
|
| Q |
101 |
cagcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgttatatagtaaaagtaaagttagacatggtatatttgtgatat |
194 |
Q |
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| T |
44567587 |
cagcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgttatatagtaaaagtaaaattagacatggtatatttgtgatat |
44567494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 36029121 - 36029299
Alignment:
| Q |
3 |
tccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagacca |
102 |
Q |
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| T |
36029121 |
tccaattattatgatattgcgagagcttccagcctcactatagcgtagattggacaagcccaatgctgtaagcattgcccacataaagcagaggagacca |
36029220 |
T |
|
| Q |
103 |
gcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgtt-atatagtaaaagtaaagttagacatgg |
180 |
Q |
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| T |
36029221 |
gcaaccatgactccaggaattgaagcaatgaaccctccaaccttccctgttaatatagtaaaagcaaaattaaacatgg |
36029299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 376 - 585
Target Start/End: Original strand, 36031439 - 36031642
Alignment:
| Q |
376 |
ctaattctgttgaacggctgttcgtcacaatatggagtaacaaaggtagatgcaaatgcaacaacagaatgataatagatacttaccaaatagagataat |
475 |
Q |
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||||||||||| ||||| | ||| |||||| ||||| | |||||||| |||||| | ||||||| ||||||||||||||||| | |||||||| |
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| T |
36031439 |
ctaattctgttcaacggttattcatcacaagatggactgtcaaaggtaaatgcaagt---acaacag---gataatagatacttacccacgagagataac |
36031532 |
T |
|
| Q |
476 |
actatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattc |
575 |
Q |
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| T |
36031533 |
actatcagaatacatgcacccaattgaactgctctgcggcttcccattttagtcacagcaattgtatgaacattttcagttaaagtggtagatccagttc |
36031632 |
T |
|
| Q |
576 |
cagtacccca |
585 |
Q |
| |
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|||||||||| |
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| T |
36031633 |
cagtacccca |
36031642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 20126569 - 20126433
Alignment:
| Q |
4 |
ccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagaccag |
103 |
Q |
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|||||||| |||||||| ||||||||||||| |||| | ||||||||||| |||||||| | ||||| ||||| |||||||| | |||||||||||||| |
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| T |
20126569 |
ccaactatgatgatattgcgagagcttccggcctcactgtagcgtagatttgacaagccccaagctgtgagcattgcccacatgaagcagaggagaccag |
20126470 |
T |
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| Q |
104 |
caaccatggcttcaggaattgaagcaatgaaccctcc |
140 |
Q |
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| T |
20126469 |
caaccataacttcaggaattgaagcaatgaaccctcc |
20126433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 585
Target Start/End: Complemental strand, 20124273 - 20124200
Alignment:
| Q |
512 |
cggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtacccca |
585 |
Q |
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|||||||||||||| ||| | |||||||| |||||||||||||||| |||||| ||||| ||||||| ||||| |
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| T |
20124273 |
cggcttcccattttagtcacggcaattgtatgaacattttcggttaaagttgtagatccagttccagttcccca |
20124200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 16069361 - 16069436
Alignment:
| Q |
430 |
aatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaact |
505 |
Q |
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|||| ||||||| |||||||||||||||||| |||| |||||||||||| | |||||||| ||||| ||||||||| |
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| T |
16069361 |
aatgaaacaacaaaatgataatagatacttagcaaagagagataatactgtcagaagacatgcacctaattgaact |
16069436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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