View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1921_low_6 (Length: 241)
Name: NF1921_low_6
Description: NF1921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1921_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37503847 - 37503621
Alignment:
| Q |
1 |
tgtatcatctagggaaagaccaaataaaaataatattgcttaatttgttagcaaaataaatggaagaagaaatacaacctgtgaagaggaaattttccat |
100 |
Q |
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| T |
37503847 |
tgtatcatctagtgaaagaccaaataaaaataatattgcttaatttgttagcaaaataaatggaagaggaaatacaacctgtgaagaggaaattttccat |
37503748 |
T |
|
| Q |
101 |
ggaatcatcttctacttcaataatatacatttcatgatctgtcaagtttaaagatcaatcaatggtgctgattaaaggattattaaggaatgggtattgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
37503747 |
ggaatcatcttctacttcaataatatacatttcatgatctgtcaagtttaaagatcaatgaatggtgctgattcaaggattattaaggaatgggtattgt |
37503648 |
T |
|
| Q |
201 |
tctacnnnnnnngcatgtcttctattt |
227 |
Q |
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||||| ||||||||||||||| |
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| T |
37503647 |
tctactttttttgcatgtcttctattt |
37503621 |
T |
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