View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1921_low_7 (Length: 227)
Name: NF1921_low_7
Description: NF1921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1921_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 33398170 - 33398276
Alignment:
| Q |
61 |
caacaccaaacaaaaccctttcgctttgtttacgagtttgaaga------------ggggaggagtaaagagaaaaatagagaattctttggattttgag |
148 |
Q |
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| T |
33398170 |
caacaccaaacaaaaccctttcgctttgtttacgagtttgaagaggggaggtatgtggggaggagtaaagagaaaaatagagaattctttggattttgag |
33398269 |
T |
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| Q |
149 |
aaaacgt |
155 |
Q |
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||||||| |
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| T |
33398270 |
aaaacgt |
33398276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 33398091 - 33398136
Alignment:
| Q |
16 |
atgaaagagcaagaccttgaattgatgaagaggaacgtgctttatc |
61 |
Q |
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| T |
33398091 |
atgaaagagcaagaccttgaattgatgaagaggaacgtgctttatc |
33398136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 33398309 - 33398364
Alignment:
| Q |
154 |
gtctccagaaagcatctcatcgcggctttgatatcagcatgaagggtagacatctt |
209 |
Q |
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| T |
33398309 |
gtctctagaaagcatcgcatcgcggctttgatatcagcatgaaggatagacatctt |
33398364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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