View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19220_high_2 (Length: 238)
Name: NF19220_high_2
Description: NF19220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19220_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32986588 - 32986809
Alignment:
| Q |
1 |
ttcttgatgttgaggagaaaaagaataaaggatcctgaaaatctaatatactagctagtattaaatattttaatcaatgctactcatgaacataatgtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32986588 |
ttcttgatgttgaggagaaaaagaataaaggatcctgaaaatctaatatactagctagtattaaatattttaatcaatgctactcatgaacataatgtta |
32986687 |
T |
|
| Q |
101 |
cttagttactataaaaactagtaattatgcacgtttgtgtgtgtaattgacctagttgatatggtaatttaaagtgcgtacgtaataactaataaagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32986688 |
cttagttactataaaaactagtaattatgcacgtttgtgtgtgtaattgacctagttgatatggtaatttaaagtgcgtacgtaataactaataaagttt |
32986787 |
T |
|
| Q |
201 |
ttgaagattggttatttaaagt |
222 |
Q |
| |
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||||||||||| |||||||||| |
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|
| T |
32986788 |
ttgaagattgggtatttaaagt |
32986809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 32993292 - 32993496
Alignment:
| Q |
1 |
ttcttgatgttgaggagaaaaagaataaaggatcctgaaaatctaatatactagctagtattaaatattttaatcaatgctactcatgaacataatgtta |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||||||||| ||||| ||||| || || |||| ||| |||| |||| |||||||||| ||||||||| |
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| T |
32993292 |
ttcttgatgttgaggggaaaaagaatacaggaccctgaaaatttaataaactag-taataataaacattataataaatgttactcatgaagataatgtta |
32993390 |
T |
|
| Q |
101 |
cttagttactataaaaactagtaattatgcacgtttgtgtgtgtaattgacctagttgatatggtaatttaaagtgcgtacgtaataactaataaagttt |
200 |
Q |
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||||| ||||||| ||||||| ||||||||||| | ||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||| |
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| T |
32993391 |
cttagctactatacaaactagcaattatgcacg--tctgtgtgtaattcacctagttgatatggtactttaaaatg----cgtaataactaataaagttt |
32993484 |
T |
|
| Q |
201 |
ttgaagattggt |
212 |
Q |
| |
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|||||||||||| |
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|
| T |
32993485 |
ttgaagattggt |
32993496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 10182619 - 10182487
Alignment:
| Q |
14 |
ggagaaaaagaataaaggatcctgaaaatctaatatactagctagtattaaatattttaatcaatgctactcatgaacataatgttacttag-ttactat |
112 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||||| |||||||||||||| ||| ||| |
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| T |
10182619 |
ggagaaaaagaataggggaccctgaaaatctaatatactagctagtaataaacattataatcaatgctattcatgaa-ataatgttacttagtttaatat |
10182521 |
T |
|
| Q |
113 |
aaaaactagtaattatgcacgtttgtgtgtgtaa |
146 |
Q |
| |
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|
| T |
10182520 |
acaaactagtaattatgtacgtctgcgtgtgtaa |
10182487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 33003392 - 33003476
Alignment:
| Q |
95 |
atgttacttagtta-ctataaaaactagtaattatgcacgtttgtgtgtgtaattgacctagttgatatggtaatttaaagtgcgta |
180 |
Q |
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|
||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
33003392 |
atgttacttagttttctatacaaactagtaattatgc--gtctgtgtgtgtaattgacctagttgatatgatgatttaaagtgcgta |
33003476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 32997694 - 32997755
Alignment:
| Q |
119 |
tagtaattatgcacgtttgtgtgtgtaattgacctagttgatatggtaatttaaagtgcgta |
180 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||||| ||||||| |||||||||||||| |
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|
| T |
32997694 |
tagtaattatgcacgtctgtgtgtgtaattcacctagttcatatggtgatttaaagtgcgta |
32997755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 33011387 - 33011551
Alignment:
| Q |
14 |
ggagaaaaagaataaaggatcctgaaaatctaatatactagctagtattaaatattttaatcaatgctactcatgaacataatgttacttagttactata |
113 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||| ||||| |||| || |||| ||| ||||||||| | ||||||| ||||| ||||||| |||||||| |
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| T |
33011387 |
ggagaaaaataataagggaccctgaaaatctattataccagctgataataaacattataatcaatgtttttcatgaa-ataatcttacttacttactata |
33011485 |
T |
|
| Q |
114 |
aaaactagtaattatgcacgtttgtgtgtgtaattgacctagttgatatggtaatttaaagtgcgta |
180 |
Q |
| |
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||||||||| | || | ||| |||||||||| ||||| |||||||| | |||||| ||||||| |
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| T |
33011486 |
caaactagtagtaat-aaaaattgagtgtgtaattcacctacttgatatgatgatttaatgtgcgta |
33011551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 10183002 - 10183102
Alignment:
| Q |
34 |
cctgaaaatctaatatactagctagtattaaatattttaatcaatgctactcatgaacataatgttacttagtt-actataaaaactagtaattatgcac |
132 |
Q |
| |
|
||||||||||||||||| | ||||| |||| ||| |||||||| | ||||||| |||||||||||||||| |||||| |||||||||||||||||| |
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| T |
10183002 |
cctgaaaatctaatatatcatttagtaataaacattaaaatcaatgttgttcatgaa-ataatgttacttagtttactatataaactagtaattatgcac |
10183100 |
T |
|
| Q |
133 |
gt |
134 |
Q |
| |
|
|| |
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|
| T |
10183101 |
gt |
10183102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 33003281 - 33003364
Alignment:
| Q |
15 |
gagaaaaagaataaaggatcctgaaaatctaatatactagctagtattaaatattttaatcaatgctactcatgaacataatgtt |
99 |
Q |
| |
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|||||||| |||| ||| ||| |||||||||||||| |||||||| |||| ||| |||||||||||| ||||||| |||||||| |
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|
| T |
33003281 |
gagaaaaataataggggaccctaaaaatctaatataccagctagtaataaaaattataatcaatgctattcatgaa-ataatgtt |
33003364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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