View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19220_low_1 (Length: 411)
Name: NF19220_low_1
Description: NF19220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19220_low_1 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 4257426 - 4257811
Alignment:
| Q |
19 |
ggagttagaccataatccacatttagctaatataacaagaattttaggcatgagttatgatgacttgccacattatttgaagtcatgcgtcttgtatttt |
118 |
Q |
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| T |
4257426 |
ggagttagaccgtaatccacatttagctaatataacaagaattttaggcatgagttatgatgacttgccacattatttgaagtcatgtgtcttgtatttt |
4257525 |
T |
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| Q |
119 |
ggtatatacccagaagattactcaattcggagttcaaggttgattcggcaatggatagcagaggggtttgttaaacatgaagtgggaaaatctttggagg |
218 |
Q |
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| T |
4257526 |
ggtatatacccagaagattactcaattcggagttcaaggttgattcggcaatggatagcagaggggtttgttaaacatgaagtgggaaaatctttggagg |
4257625 |
T |
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| Q |
219 |
aagttggagaggaatatttgacagagttgatccacagaagtttggttcatgtctcccgtgttcaatatgatggttaagcgacaagctgtcgaatccatga |
318 |
Q |
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| T |
4257626 |
aagttggagaggaatatttgacagagttgatccacagaagtttggttcatgtctcccgtgttcactatgatggtaaagcgacaagctgtcgaatccatga |
4257725 |
T |
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| Q |
319 |
tttgttacgagaaatgatcatgagaaaaatgaaggatttgagtttttgtcatgtgatggatgaagatgttcatgaacaaatctctg |
404 |
Q |
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| T |
4257726 |
tttgttacgagaaatgatcatgagaaaaatgaaggatttgagtttttgtcatgtgatggatgaagatggtcatgaacaaatctctg |
4257811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 22620542 - 22620436
Alignment:
| Q |
158 |
ttgattcggcaatggatagcagaggggtttgttaaacatgaagtgggaaaatctttggaggaagttggagaggaatatttgacagagttgatccacagaa |
257 |
Q |
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| T |
22620542 |
ttgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaa |
22620443 |
T |
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| Q |
258 |
gtttggt |
264 |
Q |
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||||||| |
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| T |
22620442 |
gtttggt |
22620436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 2760223 - 2760274
Alignment:
| Q |
312 |
tccatgatttgttacgagaaatgatcatgagaaaaatgaaggatttgagttt |
363 |
Q |
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| T |
2760223 |
tccatgatttattgcgggaagtgatcattagaaaaatgaaggatttgagttt |
2760274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 273
Target Start/End: Complemental strand, 2837876 - 2837768
Alignment:
| Q |
165 |
ggcaatggatagcagaggggtttgttaaacatgaagtgggaaaatctttggaggaagttggagaggaatatttgacagagttgatccacagaagtttggt |
264 |
Q |
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| T |
2837876 |
ggcaatggatagctgaggggtttgtcaaatctgatgagagaagaactttggagcaagtggctgaggaatacttgtcagaattgattcacagaagtctgat |
2837777 |
T |
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| Q |
265 |
tcatgtctc |
273 |
Q |
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| T |
2837776 |
tcaggtctc |
2837768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 273
Target Start/End: Complemental strand, 2855086 - 2854978
Alignment:
| Q |
165 |
ggcaatggatagcagaggggtttgttaaacatgaagtgggaaaatctttggaggaagttggagaggaatatttgacagagttgatccacagaagtttggt |
264 |
Q |
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| T |
2855086 |
ggcaatggatagctgaggggtttgtcaaatctgatgagagaagaactttggagcaagtggctgaggaatacttgtcagaattgattcacagaagtctgat |
2854987 |
T |
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| Q |
265 |
tcatgtctc |
273 |
Q |
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| T |
2854986 |
tcaggtctc |
2854978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 5281 - 5223
Alignment:
| Q |
312 |
tccatgatttgttacgagaaatgatcatgagaaaaatgaaggatttgagtttttgtcat |
370 |
Q |
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| T |
5281 |
tccatgatttattgcgtgaagtgatcattagaaaaatgaaggatttaactttttgtcat |
5223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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