View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19220_low_2 (Length: 302)

Name: NF19220_low_2
Description: NF19220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19220_low_2
NF19220_low_2
[»] chr5 (2 HSPs)
chr5 (18-192)||(10521380-10521554)
chr5 (18-78)||(35854621-35854681)
[»] chr8 (2 HSPs)
chr8 (32-103)||(7972057-7972128)
chr8 (37-101)||(7961689-7961753)
[»] chr4 (6 HSPs)
chr4 (37-78)||(47293554-47293595)
chr4 (22-74)||(54304307-54304359)
chr4 (18-107)||(55705960-55706049)
chr4 (18-78)||(45876742-45876802)
chr4 (18-72)||(45858817-45858871)
chr4 (18-72)||(56208543-56208597)
[»] chr2 (1 HSPs)
chr2 (37-72)||(24357553-24357588)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 10521380 - 10521554
Alignment:
Q  18 tggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctcaaaacagaaaagttggtattgtggagctctcatgatccggtcctact 117  Q
    ||||||||||||  |||| |||||||| |||||||| |||||||||||||||||||||| | | |||  | |||| ||||||||| ||||||||||| ||    
T  10521380 tggtgggatatcgcgtgctattgctatcgcaaaattcaaggccaatatacctcaaaacaaacaggttaatcttgtcgagctctcaagatccggtccttct 10521479  T
Q  118 ctactcatgctttcaagaggtattggctatgcttttgttgaagatcaccaatcacttaataaactactggaggac 192  Q
    |||| ||| |||| ||| || ||||| |||||  | ||||  |||| || || ||||||| ||||||| ||||||    
T  10521480 ctacgcatacttttaaggggcattggttatgcactcgttggtgatccccgattacttaatcaactactagaggac 10521554  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 35854621 - 35854681
Alignment:
Q  18 tggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctcaaaacaga 78  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  35854621 tggtgggatatcgcgtgctattgctatagcaaaattgaaggccaatatacctcaaaacaga 35854681  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 7972128 - 7972057
Alignment:
Q  32 gtgcgattgctatagcaaaattgaaggccaatatacctcaaaacagaaaagttggtattgtggagctctcat 103  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||| | |||  |||||||||||||||||    
T  7972128 gtgctattgctatagcaaaattgaaggccaatcttcctcaaaacagacatgttactattgtggagctctcat 7972057  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 7961753 - 7961689
Alignment:
Q  37 attgctatagcaaaattgaaggccaatatacctcaaaacagaaaagttggtattgtggagctctc 101  Q
    ||||||||||||||||||||||||||||| |||||||||| | | |||  |||||||||| ||||    
T  7961753 attgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctc 7961689  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 47293554 - 47293595
Alignment:
Q  37 attgctatagcaaaattgaaggccaatatacctcaaaacaga 78  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47293554 attgctatagcaaaattgaaggccaatatacctcaaaacaga 47293595  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 54304307 - 54304359
Alignment:
Q  22 gggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctcaaaa 74  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  54304307 gggatgtctcgtgctattgctatagcaaaattgaaggccaatatacctcaaaa 54304359  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 55705960 - 55706049
Alignment:
Q  18 tggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctcaaaacagaaaagttggtattgtggagctctcatgatc 107  Q
    ||||||||||||  |||| ||||||||  |||||||||| || |||||||||||||||||| | |||  | |||||||||||||| ||||    
T  55705960 tggtgggatatcgcgtgctattgctattacaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagatc 55706049  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 45876802 - 45876742
Alignment:
Q  18 tggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctcaaaacaga 78  Q
    ||||||| ||||| |||| |||||||||||||||||||| || |||||||||||| |||||    
T  45876802 tggtgggctatctcgtgctattgctatagcaaaattgaaagctaatatacctcaagacaga 45876742  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 45858871 - 45858817
Alignment:
Q  18 tggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctcaa 72  Q
    ||||||| ||||  |||| ||||||||||| ||||||||||||||||||||||||    
T  45858871 tggtgggctatcacgtgctattgctatagccaaattgaaggccaatatacctcaa 45858817  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 56208597 - 56208543
Alignment:
Q  18 tggtgggatatcttgtgcgattgctatagcaaaattgaaggccaatatacctcaa 72  Q
    ||||||| ||||| |||| |||||||||||||||||||||||   ||||||||||    
T  56208597 tggtgggctatctcgtgctattgctatagcaaaattgaaggctggtatacctcaa 56208543  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 24357553 - 24357588
Alignment:
Q  37 attgctatagcaaaattgaaggccaatatacctcaa 72  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24357553 attgccatagcaaaattgaaggccaatatacctcaa 24357588  T

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