View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19222_high_1 (Length: 435)
Name: NF19222_high_1
Description: NF19222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19222_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 27 - 419
Target Start/End: Complemental strand, 10108841 - 10108456
Alignment:
| Q |
27 |
acatgtatcatgacaactaataaatattgttacttttgatacaattttccaattaaaaaggaacatatgaaatactcttcaaataaacatatgttttaga |
126 |
Q |
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| T |
10108841 |
acatgtatcatgacaactaataaatattgttacttttgatacaattttccaattaaaaaggaacatatgaaatactcttcaaataaacatatgttttcga |
10108742 |
T |
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| Q |
127 |
aaaataaaacatatacttatagaattggtgatatttgtggattgagttttggaaaacaaactagaagactcttacaatactgtgaatcaaaatttgaatc |
226 |
Q |
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| T |
10108741 |
aaaataaaacacatacttctagaattggtgatatttgtggatcgagttttggaaaacaaactagaagactcttacgatgctatgaatcaaaatttgaatc |
10108642 |
T |
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| Q |
227 |
ttaaactgagataagtatttatatttagcatgtgatacatctaaagaaaagaattggtaatcgagtcttcatatatacctataaagctctcgtttctttt |
326 |
Q |
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| T |
10108641 |
ttaaac------aaatttgaatctttagtgtgtgatacatctaaagaaaagaattggtaatcgagtctttatatatacctataaagctctcgtttctttt |
10108548 |
T |
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| Q |
327 |
gaggaattaaaagggtgatttcnnnnnnnncttgttcaaaataagagtgatttctaaaacgagaatttcattttgtttaacgagatttgattg |
419 |
Q |
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| T |
10108547 |
gaggaatgaaaagggtgatttc-ttcttttcttgatcaaaataagagtgatttctaaaacgagaatttctttttgtttaacgagatttgattg |
10108456 |
T |
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