View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19222_high_2 (Length: 420)
Name: NF19222_high_2
Description: NF19222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19222_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 43527682 - 43528083
Alignment:
| Q |
19 |
tgaggatcaaagcattctccttcctagcctttttgttttcatgatttttctttctgacatttccccctagtctctaccatcttattacttgggctcctat |
118 |
Q |
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| T |
43527682 |
tgaggatcaaagcattctccttcctagcctttttgttttcatgatttttctttctgacatttccccctagtctctaccatcttattacttgggctcctat |
43527781 |
T |
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| Q |
119 |
atcagattttacaatcctaatggatatctgaatgactgagaggttctttagactttttgacctaaggaatctgtcaatatttttcacatttttactttac |
218 |
Q |
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| T |
43527782 |
atcagattttacaatcctaatggatatctgaatgactgagagggtctatagactttttgacctaaggaatctgtcaatatttttcacatttttactttac |
43527881 |
T |
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| Q |
219 |
cagagagatggttacaatgtttacgctttgcaagtctattcacagtttcggattttgaatcctactttccgtcctttatcaatttgaaagtgcttaaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43527882 |
cagagagatggttacaatgtttacgctttgcaagtctattcacagtttcggattttgaatcctactttccgtcctttatcaatttgaaagtgtttaaaat |
43527981 |
T |
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| Q |
319 |
attatttgtgaaactatagggaaaaggtggaaatgaggaaaagggagcaaaagaattctgaacgatatcatgactctgatggtgtgatgtgtacaaaatg |
418 |
Q |
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| T |
43527982 |
attatttgtgaaactatagggaaaatgtggaaatgaggaaaagggagaaaaagaattctgaacgatatcatgactctgatggtgtgatgtgtacaaaatg |
43528081 |
T |
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| Q |
419 |
ct |
420 |
Q |
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| T |
43528082 |
ct |
43528083 |
T |
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