View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19222_high_4 (Length: 304)
Name: NF19222_high_4
Description: NF19222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19222_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 31667884 - 31667597
Alignment:
| Q |
1 |
gacagtagacaccatgagatgtttctaacttgagtaaaccaccatttgaatgttgtaaaatggcaatttagtcgttttaataaatattaacttcggggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31667884 |
gacagtagacaccatgagatgtttctaacttgagtaaaccaccatttgaatgttgtaaaatggcaatttagtcgttttaataaatattaacttcggggct |
31667785 |
T |
|
| Q |
101 |
aactgaaaataactactctatagctaattgatgagaaacctaattcgtctatatctaaacaaaacctcgcatcaaagttttggtaagcaacctaattggc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31667784 |
aactgaaaataactactcta--gctaattgatgagaaacctaattcgtctatatctaaacaaaacctcgcatcaaagttttggtaagcaacctaattggc |
31667687 |
T |
|
| Q |
201 |
ctcggtggcatcagcatattgctagatttattttttctctctcgatgcatagaagagggcagtcaagataataacaagtatttcattgat |
290 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31667686 |
ctcagtggcatcagcatattgctagatttattttttctctcttgatgcatagaagagggcattcaagataataacaagtatttcattgat |
31667597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 31684938 - 31684651
Alignment:
| Q |
1 |
gacagtagacaccatgagatgtttctaacttgagtaaaccaccatttgaatgttgtaaaatggcaatttagtcgttttaataaatattaacttcggggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31684938 |
gacagtagacaccatgagatgtttctaacttgagtaaaccaccatttgaatgttgtaaaatggcaatttagtcgttttaataaatattaacttcggggct |
31684839 |
T |
|
| Q |
101 |
aactgaaaataactactctatagctaattgatgagaaacctaattcgtctatatctaaacaaaacctcgcatcaaagttttggtaagcaacctaattggc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31684838 |
aactgaaaataactactcta--gctaattgatgagaaacctaattcgtctatatctaaacaaaacatcgcatcaaagttttggtaagcaacctaattggc |
31684741 |
T |
|
| Q |
201 |
ctcggtggcatcagcatattgctagatttattttttctctctcgatgcatagaagagggcagtcaagataataacaagtatttcattgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31684740 |
ctcggtggcatcagcatattgctagatttattttttctctctagatgcataaaagagggcattcaagataataacaagtatttcattgat |
31684651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University