View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19222_low_3 (Length: 376)
Name: NF19222_low_3
Description: NF19222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19222_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 43528137 - 43528493
Alignment:
| Q |
1 |
ccagtttaaccctagcacattaactcaagagtatgatgcataaggcttctaaagaattattaatcctaatattctaacggttacagctcccagaaaggtg |
100 |
Q |
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| T |
43528137 |
ccagtttaaccctagcacattcactcaagagtatgatgcataaggcttctaaagaattattaatcctaatattctaacggttacagctcccagaaaggtg |
43528236 |
T |
|
| Q |
101 |
aaagcttttttgtggaccatggtactagataaaattaatacaagcaatctgtttatgcacccgtaggctgtagctctttggcttcagaagactgtttgta |
200 |
Q |
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| T |
43528237 |
aaagcttttttgtggaccatggtactagataaaattaatacaagcaatctgtttatgcacccgtaggctgtagctctttggcttcagaagactgtttgta |
43528336 |
T |
|
| Q |
201 |
ttaatttatatgcaatgtgttttttgtactaaagagattaataggcatcctttaatattacgcactgtcaaaataagagattaatagtcatccttgtatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43528337 |
ttaatttatatgcaatgtgttttttgtactaaagagattaataggcatcctttaatattacgcactgtcaaaataag--------agtcatccttgtatc |
43528428 |
T |
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| Q |
301 |
acattatgatgatacaccatatcaatttggtatccttttagtccaaggatctattttttcttctc |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |
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| T |
43528429 |
acattatgatgatacaccatatcaatttggtatccttttagtccaagtatctatcttttcctctc |
43528493 |
T |
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