View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19222_low_5 (Length: 293)
Name: NF19222_low_5
Description: NF19222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19222_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 30744437 - 30744701
Alignment:
| Q |
20 |
cctggtaggttgctccgatcttcatcccttaatctcaacctatctattatcacaacaaccaccaatcaacacgttagcacttccagatttatccaaaatc |
119 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30744437 |
cctggtaggttgccccgatcttcatcccttaatctcaacctatctattatcacaacaaccaccaatcaacacgttagcacttccagatttatccaaaatc |
30744536 |
T |
|
| Q |
120 |
aatctcttcaataagaagaaaccagatcctgattcaatcggaaatacttctcaacctccctccatcgttaacggtattttgaaacgtgattggcttctta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30744537 |
aatctcttcaataagaagaaaccagatcctgattcaatcggaaatacttctcaacctccctccatcgttaacggtattttgaaacgtgattggcttctta |
30744636 |
T |
|
| Q |
220 |
aacaccgtactaagattccttccgttgttgcttcgcttttttcaacggatcgtgtttttgatgat |
284 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
30744637 |
aacaccgtactaagattccttccgttgttgcttcgctttttgcaacggatcgtgtttttggtgat |
30744701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 6615826 - 6615581
Alignment:
| Q |
22 |
tggtaggttgctccgatcttcatcccttaatctcaacctatctattatcacaacaaccaccaatcaacacgttagcacttccagatttatccaaaatcaa |
121 |
Q |
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|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
6615826 |
tggtaggttgtcccaatcttcatcccttaatctcaacctccctattatcacaacaaccaccaatcgacacattagcacttccagatttatccaaaatcaa |
6615727 |
T |
|
| Q |
122 |
tctcttcaataagaagaaaccagatcctgattcaatcggaaatacttctcaacctccctccatcgttaacggtattttgaaacgtgattggcttcttaaa |
221 |
Q |
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| T |
6615726 |
tctcttcaataagaagaaaccagttcctgattcaatcatcaatacttatcaacctccct----------tggtgtcttgaaacatgattgacttcttaaa |
6615637 |
T |
|
| Q |
222 |
caccgtactaagattccttccgttgttgcttcgcttttttcaacggatcgtgtttt |
277 |
Q |
| |
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|||||||| || || ||||| |||||| ||||||||||| | || ||||||||||| |
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| T |
6615636 |
caccgtaccaaaatcccttctgttgtttcttcgctttttccgactgatcgtgtttt |
6615581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 47668130 - 47667905
Alignment:
| Q |
22 |
tggtaggttgctccgatcttcatcccttaatctcaacctatctattatcacaacaaccaccaatcaacacgttagcacttccagatttatccaaaatcaa |
121 |
Q |
| |
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|||||||||| || |||||||||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
47668130 |
tggtaggttgtcccaatcttcatccgttaatctcaacctccctattatcacaacaaccaccaatcgacacattagcacttccagatttatccaaaatcaa |
47668031 |
T |
|
| Q |
122 |
tctcttcaataagaagaaaccagatcctgattcaatcggaaatacttctcaacctccctccatcgttaacggtattttgaaacgtgattggcttcttaaa |
221 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||| |||||||||||||||| |
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| T |
47668030 |
tctcttcggtaagaagaaaccagatcctgattcaatcgtcaatacttctcaacctccct----------tggtgtcttgaaacatgattggcttcttaaa |
47667941 |
T |
|
| Q |
222 |
caccgtactaagattccttccgttgttgcttcgctt |
257 |
Q |
| |
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|||||||| || || |||||||||||| |||||||| |
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| T |
47667940 |
caccgtaccaaaatcccttccgttgtttcttcgctt |
47667905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 277
Target Start/End: Original strand, 47766037 - 47766267
Alignment:
| Q |
37 |
atcttcatcccttaatctcaacctatctattatcacaacaaccaccaatcaacacgttagcacttccagatttatccaaaatcaatctcttcaataagaa |
136 |
Q |
| |
|
||||||| |||||||||||||||| |||| || ||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
47766037 |
atcttcaccccttaatctcaacctccctatcattacaacaaccgccaatggacacattagcacttccagatttatccaagatcaatctcttcagtaagaa |
47766136 |
T |
|
| Q |
137 |
gaaaccagatcctgattcaatcggaaatacttctcaacctccctccatcgttaacggtattttgaaacgtgattggcttcttaaacaccgtactaagatt |
236 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||| || || |
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| T |
47766137 |
gaaaccagatcctgattcaatcgttaatacttctcaacctccct----------tggtgtcttgaaacatgattggcttcttaaacaccgtaccaaaatc |
47766226 |
T |
|
| Q |
237 |
ccttccgttgttgcttcgcttttttcaacggatcgtgtttt |
277 |
Q |
| |
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|||||||||||| ||||||||||| | || ||||||||||| |
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| T |
47766227 |
ccttccgttgtttcttcgctttttccgactgatcgtgtttt |
47766267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 277
Target Start/End: Complemental strand, 18136811 - 18136637
Alignment:
| Q |
93 |
ttagcacttccagatttatccaaaatcaatctcttcaataagaagaaaccagatcctgattcaatcggaaatacttctcaacctccctccatcgttaacg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
18136811 |
ttagcacttccagatttatccaaaatcaatctcttcaataagaagaaaccagatcctgattcaatcgtcaatacttctcaacctccct----------tg |
18136722 |
T |
|
| Q |
193 |
gtattttgaaacgtgattggcttcttaaacaccgtactaagattccttccgttgttgcttcgcttttttcaacggatcgtgtttt |
277 |
Q |
| |
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|| | |||||||||||||| | |||||||||| |||| || || ||||||||||||||||| |||||| | || ||| ||||||| |
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| T |
18136721 |
gtgtcttgaaacgtgattgacctcttaaacactgtaccaaaatcccttccgttgttgcttcactttttccgactgattgtgtttt |
18136637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 18138991 - 18138943
Alignment:
| Q |
37 |
atcttcatcccttaatctcaacctatctattatcacaacaaccaccaat |
85 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18138991 |
atcttcatcccttaatctcaacctccctattatcacaacaaccaccaat |
18138943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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