View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19222_low_8 (Length: 237)

Name: NF19222_low_8
Description: NF19222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19222_low_8
NF19222_low_8
[»] chr1 (6 HSPs)
chr1 (1-237)||(246716-246952)
chr1 (1-233)||(235062-235294)
chr1 (19-233)||(8814397-8814611)
chr1 (19-233)||(231448-231662)
chr1 (63-233)||(251429-251596)
chr1 (121-176)||(4439829-4439884)
[»] chr2 (2 HSPs)
chr2 (121-176)||(20694393-20694448)
chr2 (27-59)||(20694498-20694530)
[»] chr3 (13 HSPs)
chr3 (121-177)||(9425542-9425598)
chr3 (121-177)||(9617554-9617610)
chr3 (126-237)||(41985602-41985713)
chr3 (129-177)||(9397762-9397810)
chr3 (129-177)||(9407343-9407391)
chr3 (121-176)||(9494900-9494955)
chr3 (121-176)||(9352870-9352925)
chr3 (121-172)||(9377055-9377106)
chr3 (130-176)||(9343823-9343869)
chr3 (108-176)||(9402335-9402403)
chr3 (108-176)||(9420574-9420642)
chr3 (133-177)||(9626571-9626615)
chr3 (189-237)||(41980891-41980939)
[»] chr6 (4 HSPs)
chr6 (126-233)||(7041470-7041577)
chr6 (126-176)||(7012788-7012838)
chr6 (126-176)||(7025724-7025774)
chr6 (126-176)||(9159593-9159643)
[»] chr5 (1 HSPs)
chr5 (112-168)||(18571068-18571124)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 246716 - 246952
Alignment:
Q  1 cttcatctgagatggcaaaacaattcaaaatattcaggataatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  246716 cttcatctgagatggcaaaacaattcaaaatattcaggataatcggacaaaggtaaaagtcgaccatcatcccagtccaaaaaagagctcttacaccgca 246815  T
Q  101 cacgagtgaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  246816 cacgagtgaagatattatccataatgatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaa 246915  T
Q  201 aactatatcccctaaattagccaacttcacccatttc 237  Q
    |||| |||| |||||||||||||||||||||||||||    
T  246916 aactgtatctcctaaattagccaacttcacccatttc 246952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 235062 - 235294
Alignment:
Q  1 cttcatctgagatggcaaaacaattcaaaatattcaggataatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgca 100  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |||    
T  235062 cttcatctgagatggcaaaacaattcagaatattcagggtaattggacaaaggtaaaagttgaccatcatccaagtccaaaaaagagctcttatactgca 235161  T
Q  101 cacgagtgaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaa 200  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||  | || | |||||||||||| ||    
T  235162 cacgagtgaagatattatccataatgatgactaaattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaa 235261  T
Q  201 aactatatcccctaaattagccaacttcaccca 233  Q
    |||| ||||||||||||| ||||||||||||||    
T  235262 aactctatcccctaaatttgccaacttcaccca 235294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 8814611 - 8814397
Alignment:
Q  19 aacaattcaaaatattcaggataatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattat 118  Q
    ||||||| | ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||| | || |  |  ||| ||||||||||| ||    
T  8814611 aacaatttagaatattcaggataatcgaacaaaggcaaaggtcgaccatcatccaagtccaaaaaatagcccatagaaggatcacaagtgaagatatcat 8814512  T
Q  119 ccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaatt 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||  ||||||| ||||||||| |||||||||||||    
T  8814511 ccataatgatcacacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaatt 8814412  T
Q  219 agccaacttcaccca 233  Q
     ||||||||||||||    
T  8814411 cgccaacttcaccca 8814397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 231448 - 231662
Alignment:
Q  19 aacaattcaaaatattcaggataatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattat 118  Q
    ||||||||||||||||||| ||| |||  |||||| ||||| |||||||||||||||||||||||      |  |||  || ||  | |||| |||||||    
T  231448 aacaattcaaaatattcagcatagtcgatcaaaggcaaaagccgaccatcatccaagtccaaaaa------cacacagggcgcattactgaaaatattat 231541  T
Q  119 ccataatgatgacacaattccctttgggaacacacaaatcca------aagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccc 212  Q
    ||||||||||||||||||||||||| |||||||| |||||||      ||||||||||||||||| | || |   |||||||||||||||||||||||||    
T  231542 ccataatgatgacacaattcccttttggaacacataaatccaaagcagaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccc 231641  T
Q  213 taaattagccaacttcaccca 233  Q
    |||||||||||||||||||||    
T  231642 taaattagccaacttcaccca 231662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 251596 - 251429
Alignment:
Q  63 accatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaa 162  Q
    ||||||||||||||||||||||||| |||||||   |   ||| |||||||||||||||||||||| |||||||||| |||  |||||||||||||| |     
T  251596 accatcatccaagtccaaaaaagaggtcttacaatac---cgattgaagatattatccataatgatcacacaattccgtttccgaacacacaaatccgat 251500  T
Q  163 gcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcaccca 233  Q
    |||||| |||||||| | || | | ||||||||||||||||| ||||||||| ||| |||||||| |||||    
T  251499 gcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttaccca 251429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 4439829 - 4439884
Alignment:
Q  121 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    |||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  4439829 ataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaa 4439884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 20694448 - 20694393
Alignment:
Q  121 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  20694448 ataaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaa 20694393  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 20694530 - 20694498
Alignment:
Q  27 aaaatattcaggataatcggacaaaggtaaaag 59  Q
    |||||||||||||||||||||||||||| ||||    
T  20694530 aaaatattcaggataatcggacaaaggtgaaag 20694498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 9425542 - 9425598
Alignment:
Q  121 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 177  Q
    |||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9425542 ataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaat 9425598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 9617610 - 9617554
Alignment:
Q  121 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 177  Q
    |||| |||||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  9617610 ataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaat 9617554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 41985602 - 41985713
Alignment:
Q  126 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaac 225  Q
    |||||||||||| ||||||  |||| |||||||| ||||||||||||||||  | ||      |||||||||||||||| ||||||||||| | ||||||    
T  41985602 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 41985701  T
Q  226 ttcacccatttc 237  Q
    || |||||||||    
T  41985702 ttgacccatttc 41985713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 9397762 - 9397810
Alignment:
Q  129 gacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 177  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  9397762 gacacaattccctttggcaacacacaaatccaaagctgaagcggaaaat 9397810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 9407343 - 9407391
Alignment:
Q  129 gacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 177  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9407343 gacacaattccctttggcaacacacaaatccgaagctgaagcagaaaat 9407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 9494955 - 9494900
Alignment:
Q  121 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    |||| |||||||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  9494955 ataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaa 9494900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 9352870 - 9352925
Alignment:
Q  121 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    |||| |||||||||||| |||||||||| ||||| |||| || |||||||||||||    
T  9352870 ataaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaa 9352925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 9377055 - 9377106
Alignment:
Q  121 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcag 172  Q
    |||| |||||||||||| |||||||||| ||||| |||| ||||||||||||    
T  9377055 ataaagatgacacaatttcctttgggaagacacagatcccaagcagaagcag 9377106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 9343823 - 9343869
Alignment:
Q  130 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    |||||||| ||| | ||||||||||||||| ||||||||||||||||    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaa 9343869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 9402335 - 9402403
Alignment:
Q  108 gaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    |||||| | ||| |||| ||||| |||||||||||| ||||||||||||||  | ||||| ||||||||    
T  9402335 gaagatttcatcaataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9402403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 9420574 - 9420642
Alignment:
Q  108 gaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    |||||| | ||| |||| ||||| |||||||||||| ||||||||||||||  | ||||| ||||||||    
T  9420574 gaagatttcatcaataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9420642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 9626615 - 9626571
Alignment:
Q  133 caattccctttgggaacacacaaatccaaagcagaagcagaaaat 177  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||    
T  9626615 caattccctttggaaacacacaaatccgaagctgatgcagaaaat 9626571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 41980891 - 41980939
Alignment:
Q  189 ccccaagaacaaaactatatcccctaaattagccaacttcacccatttc 237  Q
    |||||||||||||||| ||||||||||| | | |||||| |||||||||    
T  41980891 ccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttc 41980939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 7041470 - 7041577
Alignment:
Q  126 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaac 225  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| |||| ||  | || |     ||||||||||||||  ||||||||||| ||| ||||    
T  7041470 gatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaac 7041569  T
Q  226 ttcaccca 233  Q
    ||||||||    
T  7041570 ttcaccca 7041577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 7012788 - 7012838
Alignment:
Q  126 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    ||||||| |||||||||||| ||||||||||||| ||||| | ||||||||    
T  7012788 gatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaa 7012838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 7025724 - 7025774
Alignment:
Q  126 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    ||||||| |||||||||||| ||||||||||||  ||||| ||||||||||    
T  7025724 gatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaa 7025774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 9159643 - 9159593
Alignment:
Q  126 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 176  Q
    ||||| |||||||||||||| ||||||||||||  |||||||| |||||||    
T  9159643 gatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaa 9159593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 18571068 - 18571124
Alignment:
Q  112 atattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaa 168  Q
    ||||||| |||||  || |||||||||||||||| ||||||||||||| ||||||||    
T  18571068 atattattcataaaaatcacacaattccctttggaaacacacaaatccgaagcagaa 18571124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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