View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19223_high_1 (Length: 431)
Name: NF19223_high_1
Description: NF19223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19223_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 416
Target Start/End: Complemental strand, 43154135 - 43153736
Alignment:
| Q |
3 |
taaaaaataatgtgagtatgagtggaaaagtcctctgatccaaacagccaatcctacgttttatttgagttgttggcgaaggatgttgatagaattgtgt |
102 |
Q |
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| T |
43154135 |
taaaaaataatgtaagtatgagtggaaaagtcctctgatccaaacagccaatcctacgttttatttgagttgttggcaaaggatgttg------------ |
43154048 |
T |
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| Q |
103 |
tggtagtcaagttatacaacaattgacgttcaattgatgcttgtatttatcaacggataaatataaacatgaattgaatatcaataccaacaaataattg |
202 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43154047 |
--gtagtcaagttatagaacaattgacgttcaattgatgcttgtatttatcaacggataaatataaacatgaattgaatatcaatacgaacaaataattg |
43153950 |
T |
|
| Q |
203 |
actccaattgaaaaataatgcaaagatgtaaaacaaacagtccaatggttgaataattaattgatcgagtgtggaataattgatcgatgtaattcaaggt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43153949 |
actccaattgaaaaataatgcaaagatgtaaaacaaatagtccaatggttgaataattaattgatcgagtgtggaataattgatcgatgtaattcaaggt |
43153850 |
T |
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| Q |
303 |
gtatcatacatagtagcagattgaattcaactttcctgggaatgaaagaagacaagttcaataacatatttaggtatttagagggaaggtgtatcacaag |
402 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43153849 |
gtatcatacatagtagcagattgaatgcaactttcctgggaatgaaagaagacaagttcaataacatatttaggtatttagagggaaggtgtatcacaag |
43153750 |
T |
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