View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19223_low_3 (Length: 309)
Name: NF19223_low_3
Description: NF19223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19223_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 3203499 - 3203790
Alignment:
| Q |
18 |
ttatgtgctgaagttgtatagatacttagcagaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtttgggaaagata |
117 |
Q |
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| T |
3203499 |
ttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtttgggaaagata |
3203598 |
T |
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| Q |
118 |
catgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcataacatcttacttgttagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
3203599 |
catgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcatagcatcttacttgttaaaa |
3203698 |
T |
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| Q |
218 |
atttcaagatatataaattaaggtactttgcatggtgaagtacgctgttcacaaacggtggcgttattagacactattcacatacataggat |
309 |
Q |
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| T |
3203699 |
atttcaagatatataaattaaggtactttgcatggtgaagtacgctgttcacaaacggtggcgttattagacactattcacatacataggat |
3203790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 3209473 - 3209709
Alignment:
| Q |
18 |
ttatgtgctgaagttgtatagatacttagcagaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtttgggaaagata |
117 |
Q |
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| T |
3209473 |
ttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtttgggaaagata |
3209572 |
T |
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| Q |
118 |
catgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcataacatcttacttgttagaa |
217 |
Q |
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| T |
3209573 |
catgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcatagcatcttacttgttagaa |
3209672 |
T |
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| Q |
218 |
atttcaagatatataaattaaggtactttgcatggtga |
255 |
Q |
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| T |
3209673 |
atttcaagatatataaattaaggtac-ttgcatggtga |
3209709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 3217445 - 3217509
Alignment:
| Q |
42 |
cttagcagaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtt |
106 |
Q |
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|||||||| ||||||||||||| |||||| |||||||| |||||||||||| ||| | ||||||| |
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| T |
3217445 |
cttagcaggagaatgaaaccaagaagcaagattggagtgagttccatcttgtttatgttcatgtt |
3217509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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