View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19224_high_2 (Length: 541)
Name: NF19224_high_2
Description: NF19224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19224_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 24942069 - 24942119
Alignment:
| Q |
21 |
aaaacgcatatgagcatattgacatatgttgttctattagttacatgttgc |
71 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24942069 |
aaaacgcatatgagcatattgatatatgttgttctattagttacatgttgc |
24942119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 20515628 - 20515595
Alignment:
| Q |
236 |
catctctggaagcatcttcaatcattcaacttct |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
20515628 |
catctctggaagcatcttcaatcattcaacttct |
20515595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 11299456 - 11299382
Alignment:
| Q |
127 |
cattgacagaataagcaccttaccagactctatactctgccacatcctttcattcctctcaaccaaaacctccat |
201 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||||||||| | || |||||| ||||||||||| |||| |
|
|
| T |
11299456 |
cattgacagactaagcaatctaccagactctgtactctgccacatcttctccttcctcccaaccaaaaccaccat |
11299382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 35190036 - 35189933
Alignment:
| Q |
137 |
ataagcaccttaccagactctatactctgccacatcctttcattcctctcaaccaaaacctccatatcaacaatctctctcgtttctcgccgctggcgcc |
236 |
Q |
| |
|
|||| |||| |||||||||| | |||||||| || || || |||||| ||||||||| | || | |||||||| ||||||| |||||||| ||||||| |
|
|
| T |
35190036 |
ataaacaccctaccagactcactcctctgccatatactctccttcctcccaaccaaaatcaccgtcacaacaatccctctcgtctctcgccgttggcgcc |
35189937 |
T |
|
| Q |
237 |
atct |
240 |
Q |
| |
|
|||| |
|
|
| T |
35189936 |
atct |
35189933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University