View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19224_high_5 (Length: 335)
Name: NF19224_high_5
Description: NF19224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19224_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 527423 - 527105
Alignment:
| Q |
1 |
agttagttggtcaaaattaccttgagtgaagtgcgcctgttctgaaaccaaaacttgatttgcgttgggtctaacccagtccgaaggctcagctctcttc |
100 |
Q |
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| T |
527423 |
agttagttggtcaaagttaccttcagtgaagtgcgcctgttctgaaaccaaaacttgatttgcgttgggtctaacccagtccgaaggctcagctctcttc |
527324 |
T |
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| Q |
101 |
tctgagcatcattaggattaggacactgcttgaagaaactgatgac-aaaaccaagttcaaaaaatatggagcaaagtaaagnnnnnnnnnnnnnnngat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||| |
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| T |
527323 |
tctgagcatcattaggattaggacactgcttgaagaagctgatgacaaaaaccaagttcaaaaaatatggagc-aagtaaagatatattatatatatgat |
527225 |
T |
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| Q |
200 |
cacatat---tcttattcaaatgaaatatataaaaatggttcctacgtatccatttcatcaatttgttgctgtgtgtggcggcgatatgtcctttttctg |
296 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
527224 |
cacatattaatcttattcagatgaaatatataaaaatggttcctacgtatccatttcatcaatttgttgctgtgtgtggcggcgatatgtcctttttctg |
527125 |
T |
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| Q |
297 |
cgacgttggttggattcttg |
316 |
Q |
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|||||||||||||||||||| |
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| T |
527124 |
cgacgttggttggattcttg |
527105 |
T |
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