View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19224_high_7 (Length: 241)
Name: NF19224_high_7
Description: NF19224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19224_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 29338456 - 29338666
Alignment:
| Q |
14 |
agaaagaaaggttgatgacggaaacattaagaaacaaaccttcggcacatattcacaagtaagcatctgttccatccactatccttacatatgcattcca |
113 |
Q |
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| T |
29338456 |
agaaagaaaggttgatgactgaaacattaagaaacaaaccttcggcacatattcacaagtaagcatctgttccatccactatccttacatatgcattcca |
29338555 |
T |
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| Q |
114 |
tttaattaccacccc-aagtttacacctcattccatcaaaagagaataagtaaatttatctaataaaattgatgcgactcattaacatatgcatcaaaga |
212 |
Q |
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| T |
29338556 |
tttaattaccaccccaaagtttacacctcattccatcaaaagagaataagtaaatttatctaataaaattgatgcgactcattaacatatgcataaaaga |
29338655 |
T |
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| Q |
213 |
aatttaggatc |
223 |
Q |
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| T |
29338656 |
aatttaggatc |
29338666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 29351900 - 29351972
Alignment:
| Q |
99 |
tacatatgcattccatttaattaccaccccaagtttacacctcattccatcaaaagagaataagtaaatttatctaataa |
178 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||| |||||| || |||| |||||||||||||| |
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| T |
29351900 |
tacatatgcattccatttaactacca------gtttacacctcattccattaaaaga-aaaaagttaatttatctaataa |
29351972 |
T |
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