View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19224_low_1 (Length: 609)
Name: NF19224_low_1
Description: NF19224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19224_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 49628525 - 49629103
Alignment:
| Q |
1 |
aaagaaaagattgaatagtaatgctgtaggatccaaaaagaaaagaaataatgaatgaatagataaaagaaggtgaatttttaattcaaaccttaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49628525 |
aaagaaaagattgaatagtaatgttgtaggacccaaaaagaaaagaaataatgaatgaatagataaaagaaggtgaatttttaattcaaaccttaaattt |
49628624 |
T |
|
| Q |
101 |
gaattnnnnnnnnnnnnnnnnngtttgtaaataaatgaattgaattactttaagacatccgatctttgactgaatctttaattaaattaattaaccctcc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49628625 |
gaattaaaaatataaaagaaaagtttgtaaataaatgaattgaattactttaacacatccgatctttgactgaatctttaattaaattaattaaccctcc |
49628724 |
T |
|
| Q |
201 |
atttttgtcattaattcagtgattgactggtcctattttttcgtatctattttcgtacaaaatattttgttactacttcaaatagtagcagcaatagtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49628725 |
atttttgtcattaattcagtgattgaatggtcctatttttt------------cgtacaaaatattttgttactacttcaaatagtagcagcaatagtga |
49628812 |
T |
|
| Q |
301 |
tcaatgaaaaagaaaataaaacccgtacagatccatctacattttaggaaaattaaacacaacaatggacgcttcccaattgccgcatttcgcaatcaca |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49628813 |
tcgatgaaaaagaaaataaaacccgtacagatccatctacattttaggaaaattaaacacaacaatggacgcttcccaattgccgcatttcgcaatcaca |
49628912 |
T |
|
| Q |
401 |
attaacacacaagaagaaacgttgctgctcctaggttttaccactaactgtgattgattatttttcagatattgtccaattaatatgtgatcaattgttt |
500 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49628913 |
attaacacac---aagaaacgttgctgctcctaggttttaccactaactgtgattg---atttttcagatattgtccaattaatatgtgatcaattgttt |
49629006 |
T |
|
| Q |
501 |
ccttaatttgcaaattgctttctgatttatatcannnnnnnnatatattaacaagaacaagaatatctgatttctctttctacaattgttttgtttt |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49629007 |
ccttaatttgcaaattgctttctgatttatatcattttttttatatattaacaagaacaagaatatctgatttctctttctacaattgttttgtttt |
49629103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University