View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19224_low_3 (Length: 468)
Name: NF19224_low_3
Description: NF19224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19224_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 31398186 - 31398624
Alignment:
| Q |
18 |
gtaataaagttatcctgtgataaaagatagcttagtttgtatcatgaaattctactaataatttgtcttacattaccgaaatttccaaaccagggaatcc |
117 |
Q |
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| T |
31398186 |
gtaataaagttatcctgtgataaaagatagcttagtttgtatcatgaaattctactaataatttgtcttacattaccgaaatttccaaaccagggaatcc |
31398285 |
T |
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| Q |
118 |
atccatcaattagaggagaagtttgggaatttctactcggttgctatgaacccacgagtacattcgaggaaagagaagagataaggcagcgccgaaggta |
217 |
Q |
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| T |
31398286 |
atccatcaattagaggagaagtttgggaatttctactcggttgctatgaacccacgagtacattcgaggaaagagaagagataaggcagcgccgaaggta |
31398385 |
T |
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| Q |
218 |
atcatttttcctttcataagctcctaattactgtcacattctactctgcaccttaagattgttgtgttttacattataaatctaatcgatcgttgattag |
317 |
Q |
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| T |
31398386 |
atcatttttccttctataagctcctaattactgtcacattctactctgcaccttaagattgttgtgttttacattataaatctaatcaatcgttgattag |
31398485 |
T |
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| Q |
318 |
tttgttgtataacttctttctatattttcaggacgcaatatgctgagtggaaggaagaatgtcgccaactgtttcctcttgtaggaagtggtagatttat |
417 |
Q |
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| T |
31398486 |
tttgttgtataacttctttctatattttcaggacgcaatatgctgaatggaaggaagaatgtcgccaactgtttcctcttgtaggaagtggtagatttat |
31398585 |
T |
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| Q |
418 |
cactgcacctgtagttaccgacgatggtgtaccggttca |
456 |
Q |
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| T |
31398586 |
cactgcacctgtagttaccgacgatggtgtaccggttca |
31398624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 34942356 - 34942242
Alignment:
| Q |
103 |
caaaccagggaatccatccatcaattagaggagaagtttgggaatttctactcggttgctatgaacccacgagtacattcgaggaaagagaagagataag |
202 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||| || | |||||||| || |||||||| | ||||| |
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| T |
34942356 |
caaaccagggagtccatccatcaattaggggagaagtttgggaatttttacttggttgctatgacccaaaaagtacatttgacgaaagagatcaaataag |
34942257 |
T |
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| Q |
203 |
gcagcgccgaaggta |
217 |
Q |
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| T |
34942256 |
agaacgccgaaggta |
34942242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 34941966 - 34941918
Alignment:
| Q |
372 |
aagaatgtcgccaactgtttcctcttgtaggaagtggtagatttatcac |
420 |
Q |
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| T |
34941966 |
aagaatgtcgccaattgtttcctcttgttggaagtggtcgatttatcac |
34941918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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