View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19224_low_5 (Length: 380)
Name: NF19224_low_5
Description: NF19224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19224_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 361
Target Start/End: Original strand, 42416706 - 42417059
Alignment:
| Q |
3 |
gttggtctagttagtaagaagtaaagtcatgttcaatagaaaaagagttcaactaaattatgccccaatga---aaactttatatcatgccccaatgaaa |
99 |
Q |
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||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||| | | | ||| |||||||||||||||||||||||||| |
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| T |
42416706 |
gttggtctagtaagtaagaagtaaattcatgttcaacagaaacagagttcaact------tcctctaatctttgaaactttatatcatgccccaatgaaa |
42416799 |
T |
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| Q |
100 |
actttgagtgagactctattcacctaaatttttattggcacatgactaaatacatttaatcatgtaacaacacactcttcaacttgaatttcaaattcag |
199 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42416800 |
actttgagtgagact--attcacctaaatttttattggcacatgactaaatacattcaatcatgtaacaacacactcttcaacttgaatttcaaattcag |
42416897 |
T |
|
| Q |
200 |
gaagnnnnnnntatattttggaacaagtccttcctctttttcttgatgttttagaacttcaattatttttaaaaatatgcgtatgtctttttaaggcttt |
299 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
42416898 |
gaagaaaaaaatatattttggaacaaatccttcctctttttcttgatgttttaggacttcaattatttttaaaaatatgtgcatgtctttttaaggcttt |
42416997 |
T |
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| Q |
300 |
gccaatttattttgaagttcccctnnnnnnngaattcattttaaagttcatgatgaagatgt |
361 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
42416998 |
gccaatttattttgaagttcccctaaaaaaagaagtcattttaaagttcatgatgaagatgt |
42417059 |
T |
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