View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_high_11 (Length: 305)
Name: NF19225_high_11
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 35671896 - 35672168
Alignment:
| Q |
14 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35671896 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgtagaatttg |
35671995 |
T |
|
| Q |
114 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgtaatactctagttttca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
35671996 |
attaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtatagtactctagttttca |
35672095 |
T |
|
| Q |
214 |
ccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacacaccaaaaacatttcttgcctac |
286 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35672096 |
ccaaaaagaagataaacaaattaacattgtaggcttttgatataagcacacaccaaaaacatttcttgcctac |
35672168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 38456209 - 38456393
Alignment:
| Q |
14 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
113 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38456209 |
aatatcatctcaaccattaatatatccactaccatttctcatctgctaagaaaaaagaaattaaattcaattgaaaaagttatttcaagtgcagaatttg |
38456308 |
T |
|
| Q |
114 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgta |
198 |
Q |
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| T |
38456309 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgta |
38456393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 13805218 - 13805293
Alignment:
| Q |
61 |
aagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttggttaagaaactaattcaaacata |
136 |
Q |
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||||||||||||| |||| |||||||||||||||| |||| |||||||||| ||| ||||||||| ||||||||| |
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| T |
13805218 |
aagaaaaaagaaaaaaaaagcaattgaaaaagttatctcaactgcagaatttagtttagaaactaaatcaaacata |
13805293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 19700244 - 19700305
Alignment:
| Q |
203 |
tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacac |
264 |
Q |
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|||||||||||| ||||||||||| |||||| || | | |||||||||||||| ||||||| |
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| T |
19700244 |
tctagttttcacaaaaaagaagattaacaaactacattgttaggcttttgatatcagcacac |
19700305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 20130989 - 20131211
Alignment:
| Q |
14 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
113 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20130989 |
aatatcatctcaaccattaatatctccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
20131088 |
T |
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| Q |
114 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagat----tatgtgtaatactctagtt |
209 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
20131089 |
gttaagaaactaattcaaacatagggcctacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatctatatgtagtactctagtt |
20131188 |
T |
|
| Q |
210 |
ttcaccaaaaagaagataaacaa |
232 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
20131189 |
ttcaccaaaaagaagataaacaa |
20131211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 22201881 - 22201659
Alignment:
| Q |
14 |
aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
113 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22201881 |
aatatcatctcaaccattaatatctccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgcagaatttg |
22201782 |
T |
|
| Q |
114 |
gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagat----tatgtgtaatactctagtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
22201781 |
gttaagaaactaattcaaacatagggcctacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatctatatgtagtactctagtt |
22201682 |
T |
|
| Q |
210 |
ttcaccaaaaagaagataaacaa |
232 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
22201681 |
ttcaccaaaaagaagataaacaa |
22201659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 19668340 - 19668401
Alignment:
| Q |
203 |
tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacac |
264 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| || | || |||||||||||||| ||||||| |
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|
| T |
19668340 |
tctagttttcacaaaaaagaagattaacaaactacatttttaggcttttgatatcagcacac |
19668401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 8803216 - 8803155
Alignment:
| Q |
203 |
tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacac |
264 |
Q |
| |
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|||||||||||| ||||||||||| |||||| || | | |||||||||||||| ||||||| |
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|
| T |
8803216 |
tctagttttcacaaaaaagaagattaacaaactacattgttaggcttttgatatcagcacac |
8803155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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