View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19225_high_12 (Length: 301)

Name: NF19225_high_12
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19225_high_12
NF19225_high_12
[»] chr6 (2 HSPs)
chr6 (217-291)||(3969624-3969698)
chr6 (217-291)||(24124801-24124874)
[»] chr3 (1 HSPs)
chr3 (217-291)||(36620657-36620731)
[»] chr1 (1 HSPs)
chr1 (217-291)||(23354565-23354639)
[»] chr5 (1 HSPs)
chr5 (217-291)||(9805405-9805479)
[»] chr4 (1 HSPs)
chr4 (217-264)||(36121529-36121576)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 3969624 - 3969698
Alignment:
Q  217 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3969624 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtg 3969698  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 24124874 - 24124801
Alignment:
Q  217 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtg 291  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24124874 tgagtatcttgtccggatcaagttattctagatcaatc-atagtcatggataatatgatcaagtatttatctgtg 24124801  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 36620731 - 36620657
Alignment:
Q  217 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36620731 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtg 36620657  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 23354639 - 23354565
Alignment:
Q  217 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23354639 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtg 23354565  T

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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 9805405 - 9805479
Alignment:
Q  217 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9805405 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtctttatctgtg 9805479  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 36121576 - 36121529
Alignment:
Q  217 tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatg 264  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  36121576 tgagtatcttgtccggatcaagttattctagatcaattcatagtcatg 36121529  T

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