View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19225_high_15 (Length: 263)

Name: NF19225_high_15
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19225_high_15
NF19225_high_15
[»] chr6 (7 HSPs)
chr6 (21-263)||(2058162-2058404)
chr6 (25-263)||(2062592-2062834)
chr6 (167-236)||(2054339-2054408)
chr6 (31-137)||(2047500-2047606)
chr6 (32-147)||(2054062-2054177)
chr6 (32-137)||(2041984-2042089)
chr6 (192-228)||(2088570-2088606)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 2058162 - 2058404
Alignment:
Q  21 acagatagttctgctgagtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2058162 acagatagttctgctgagtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtg 2058261  T
Q  121 ttatcaaccaggtttgtgttcaattatggtttttgcattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttg 220  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2058262 ttatcaaccaggtttgtgttctattatggtttttgcattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttg 2058361  T
Q  221 ggttcatggaatatcatgaaccctaatttattgagcttctgtg 263  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  2058362 ggttcatggaaaatcatgaaccctaatttattgagcttgtgtg 2058404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 2062592 - 2062834
Alignment:
Q  25 atagttctgctgagtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttat 124  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| ||||||    
T  2062592 atagttctgctgagtatcgcgctttaattttgggtctaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttat 2062691  T
Q  125 caaccaggtttgtgttcaat----tatggtttttgcattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttg 220  Q
    ||||||||||||||||| ||    |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2062692 caaccaggtttgtgttctattatatatggtttctacattaacaagaaaatgaaatttacaattttcttataacatgttattggttttgcaacagtttttg 2062791  T
Q  221 ggttcatggaatatcatgaaccctaatttattgagcttctgtg 263  Q
    ||||||||||| ||||  ||||| |||||||||||||| ||||    
T  2062792 ggttcatggaaaatcagcaacccgaatttattgagcttgtgtg 2062834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 2054339 - 2054408
Alignment:
Q  167 aaatgaaatttacaattttcttataatatgttattggttttgcaacagtttttgggttcatggaatatca 236  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  2054339 aaatgaaatttacaattttcttatcatatgttattggttttgcaacagtttctgggttcatggaaaatca 2054408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 2047500 - 2047606
Alignment:
Q  31 ctgctgagtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaacca 130  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||||| ||| ||| ||||||| |||||| |||||| || | | |||| |||| ||    
T  2047500 ctgctgagtatcgtgctttaattttgggacttaatcaagcaatctataaaggatataggaacatcagtgtgcatggagactccttgcttgttgtcaatca 2047599  T
Q  131 ggtttgt 137  Q
    |||||||    
T  2047600 ggtttgt 2047606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 2054062 - 2054177
Alignment:
Q  32 tgctgagtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccag 131  Q
    ||||||||| |||||||| || |||||||| || ||||| ||| ||||| ||||||  ||||||| ||||||||||||| |||  | ||||||||| |||    
T  2054062 tgctgagtaccgcgctttgatattgggactgaaacaagctatcaataaaggatttaagaacatcagtgtgcaaggagactccaaccttgttatcaatcag 2054161  T
Q  132 gtttgtgttcaattat 147  Q
    |||||||||| |||||    
T  2054162 gtttgtgttctattat 2054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 2041984 - 2042089
Alignment:
Q  32 tgctgagtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccag 131  Q
    |||||||||||||||||| || || ||| | ||  |||||||| | | | ||| ||||||||||| ||||||||||||| |   || ||||||||| |||    
T  2041984 tgctgagtatcgcgctttgatcttaggattgaattaagcaatccagagaggatatagaaacatcaatgtgcaaggagactcagaacttgttatcaatcag 2042083  T
Q  132 gtttgt 137  Q
    ||||||    
T  2042084 gtttgt 2042089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 2088570 - 2088606
Alignment:
Q  192 atatgttattggttttgcaacagtttttgggttcatg 228  Q
    ||||||||||||||||||||||||||  |||||||||    
T  2088570 atatgttattggttttgcaacagtttaagggttcatg 2088606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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