View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_high_16 (Length: 250)
Name: NF19225_high_16
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 46152236 - 46152075
Alignment:
| Q |
75 |
ggtggcggctaggatgagtcagctgataggtacttcaccggtgaggtagcaaaaaataccattggattagatatatggtctagatcaaacataaggaaca |
174 |
Q |
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| T |
46152236 |
ggtgacggctaggatgagtcagctgataggtacttcaccggtgaggtagtaaaaaataccattggattagatatgtggtctagattaaacataaggaaca |
46152137 |
T |
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| Q |
175 |
ctaacatctctccacactcaattataacataccataagtttgttccaatctcacccactaga |
236 |
Q |
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| T |
46152136 |
ctaacatctctccacactcaattataacataccataagtttgttccaatctcacccgctaga |
46152075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 50115250 - 50115405
Alignment:
| Q |
75 |
ggtggcggctaggatgagtcagctgataggtacttcaccggtgaggtagcaaaaaataccattggattagatatatggtctagatcaaacataaggaaca |
174 |
Q |
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| T |
50115250 |
ggtgacggctaggatgagtcagctgatatgtacttcaccg-tgagggagtaaaaaataccattgaattagatatgtggtctagattaaacataaggaaca |
50115348 |
T |
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| Q |
175 |
ctaacatctctccacactcaatta-taacataccataagtttgttccaatctcaccc |
230 |
Q |
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| T |
50115349 |
ctaacatctctccacacacaatcactaacataccataagtttgatccaatctcaccc |
50115405 |
T |
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Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 23876726 - 23876882
Alignment:
| Q |
75 |
ggtggcggctaggatgagtcagctgataggtacttcaccggtgaggtagcaaaaaataccattggattagatatatggtctagatcaaacataaggaaca |
174 |
Q |
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| T |
23876726 |
ggtggcggctaggatgaggtagttgataggtccctcactggtgaggtagtaaaaaataccattggattagatatgtggtctagattaaacataaggaaca |
23876825 |
T |
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| Q |
175 |
ctaacatctctccacactcaatta-taacataccataagtttgttccaatctcaccc |
230 |
Q |
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| T |
23876826 |
ctaacatctctccacacacaatcactaacataccataagtttgatccaatctcaccc |
23876882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 3798074 - 3797952
Alignment:
| Q |
71 |
ttaaggtggcggctaggatgagtcagctgataggtacttcaccggtgaggtagcaaaaaataccattggattagatatatggtctagatcaaacataagg |
170 |
Q |
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| T |
3798074 |
ttaaggtgacggctatgatgaggtagctaataggtacttcaccggtgaggaagtaaaaaataccattggattagatatgtggtctagattaaacataagg |
3797975 |
T |
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| Q |
171 |
aacactaacatctctccacactc |
193 |
Q |
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| T |
3797974 |
aacactaatatctccccacactc |
3797952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 7419 - 7325
Alignment:
| Q |
80 |
cggctaggatgagtcagctgataggtacttcaccggtgaggtagcaaaaaataccattggattagatatatggtctagatcaaacataaggaaca |
174 |
Q |
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| T |
7419 |
cggctaggatgaggtagctaataggtctctcactgatgatggagtaaaaaatatcattggattagatatgtggtctagattaaacataaagaaca |
7325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 5527948 - 5527797
Alignment:
| Q |
80 |
cggctaggatgagtcagctgataggtacttcaccggtgaggtagcaaaaaataccattggattagatatatggtctagatcaaacataaggaacactaac |
179 |
Q |
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||||||||||||| |||| |||||| | |||||| ||||| || |||||||| |||||||||| |||| |||||||||| |||||||||||||| | || |
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| T |
5527948 |
cggctaggatgaggtagctaataggtccctcaccgatgagggagtaaaaaatatcattggattaaatatgtggtctagattaaacataaggaacattgac |
5527849 |
T |
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| Q |
180 |
atctctccacactcaatta-taacataccataagtttgttccaatctcaccc |
230 |
Q |
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| T |
5527848 |
aactctccacactcgatcactaacataccataagtttgttccaatctcaccc |
5527797 |
T |
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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 14292856 - 14292758
Alignment:
| Q |
95 |
agctgataggtacttcaccggtgaggtagcaaaaaataccattggattagatatatggtctagatcaaacataaggaacactaacatctctccacactc |
193 |
Q |
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| T |
14292856 |
agctaataggtccttcaccggtgagggagtaaaaaataccattggattagatatgtggtccatattaaacataaggaacacaaacatctctccacactc |
14292758 |
T |
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