View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_high_23 (Length: 210)
Name: NF19225_high_23
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 38355557 - 38355683
Alignment:
| Q |
17 |
agataaaataatgaagagagtaaatttataaagagaagcaagnnnnnnnn-ttgtttaagcgcttctttaaaaaataacattgaagacgagagaaattat |
115 |
Q |
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| T |
38355557 |
agataaaataatgaagagagtaa-tttataaagagaaacaagaaaaaaaaattgtttaagcgcttctttaaaaaataacattgaagacgaaagaaattat |
38355655 |
T |
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| Q |
116 |
tagtattaattaaaacgactctaatgat |
143 |
Q |
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| T |
38355656 |
tagtattaattaaaacgactctaatgat |
38355683 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 38356156 - 38356213
Alignment:
| Q |
136 |
ctaatgatcatttttctaaaacatcatgattttataatttgaaagagtaattcaaatg |
193 |
Q |
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| T |
38356156 |
ctaatgatcatttttctaaaacatcatgattttataatttgaaagagtaattcaaatg |
38356213 |
T |
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