View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_high_24 (Length: 207)
Name: NF19225_high_24
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_high_24 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 33681847 - 33682029
Alignment:
| Q |
12 |
aatattataaagaaagaactaaaattgggattcaaaagaatatggcattgccaccacaaaacatgttcaacaattagccagatacatacttccaccattt |
111 |
Q |
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| T |
33681847 |
aatattataaagaaagaactaaaattgggattcaaaagaatatggcattgccaccacaaaacatgttcaacaattagccagatacatacttccaccattt |
33681946 |
T |
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| Q |
112 |
gtaaatagaatatccatataccacgctataaacaatcaccctcagaggagaacatgtaaacctgtatcacagaagaaaattct |
194 |
Q |
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| T |
33681947 |
gtaaatagaatatccatataccacgctataaacaatcaccctcagaggagaacatgtaaacctgtatcatagaagaaaattct |
33682029 |
T |
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Target: scaffold0054 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 15188 - 15123
Alignment:
| Q |
12 |
aatattataaagaaagaactaaaattgggattcaaaagaatatggcattgccaccacaaaacatgt |
77 |
Q |
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| T |
15188 |
aatattataaagaaagaactaaaattgggattcaaaagaatatagcattgccaccacaaaacatgt |
15123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 16242117 - 16242052
Alignment:
| Q |
12 |
aatattataaagaaagaactaaaattgggattcaaaagaatatggcattgccaccacaaaacatgt |
77 |
Q |
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| T |
16242117 |
aatattataaagaaagaactaaaattgggattcaaaagaatatagcattgccaccacaaaacatgt |
16242052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 22013879 - 22013814
Alignment:
| Q |
12 |
aatattataaagaaagaactaaaattgggattcaaaagaatatggcattgccaccacaaaacatgt |
77 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22013879 |
aatattataaagaaagaactaaaattgggattcaaaagaatatagcattgccaccacaaaacatgt |
22013814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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