View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_high_9 (Length: 395)
Name: NF19225_high_9
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 36730427 - 36730065
Alignment:
| Q |
23 |
catgttcatgttcttcacctactaagaatctctcaggtatatactcttcagggttgacccatgattgtgggtccctcataatggcatagacattgacaag |
122 |
Q |
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| T |
36730427 |
catgttcatgttcttcacctactaagaatctctcaggtatatactcttcagggttgacccatgattgtgggtccctcataatggcatagacattgacaag |
36730328 |
T |
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| Q |
123 |
tgtccttgtatgagctttgatatcatagccgttgattttgcaatcttctgatgattgtctaagagcaaacggtgccgttggatgaagtcttagcacttct |
222 |
Q |
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| T |
36730327 |
tgtccttgtatgagctttgatatcatagccgttgattttgcaatcttctgatgattgtctaagagcaaacggtgccgttggatgaagtcttagcacttct |
36730228 |
T |
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| Q |
223 |
ttcacacatgattgtaggtaaggcatttttggaatgtctgattctttaaccaatctattagtacctactacatcattaatctcagcccttaatttcttca |
322 |
Q |
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| T |
36730227 |
ttcacacatgattgtaggtaaggcatttttggaatgtctgattctttaaccaatctattagtacctactacatcattaatctcagcccttaatttcttca |
36730128 |
T |
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| Q |
323 |
atattttagggttgttcattatctcagccatggtccattgcattgccactgaggatgtctctg |
385 |
Q |
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| T |
36730127 |
atattttagggttgttcattatctcagccatggtccattgcattgccactgaggatgtatctg |
36730065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36730461 - 36730427
Alignment:
| Q |
1 |
tcatcaccatccattttattcacatgttcatgttc |
35 |
Q |
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| T |
36730461 |
tcatcaccatccattttattcacatgttcatgttc |
36730427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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