View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_low_1 (Length: 829)
Name: NF19225_low_1
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 15 - 818
Target Start/End: Complemental strand, 40570573 - 40569770
Alignment:
| Q |
15 |
cacagaactataaaatannnnnnnnaaaaaattaatctaattgtgtatgcagaaataataaataatgacaaacatctctgtaatgagtgcacacggcaag |
114 |
Q |
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| T |
40570573 |
cacagaactataaaatattttttaaaaaaaattaatctaattgtgtatgcagaaataataaataatgacaaacatctctgtaatgagtgcacacggcaag |
40570474 |
T |
|
| Q |
115 |
aaatgctagaattaatctcatgatgtggctatgaaattgggattagatgacaaacaaaaacttactcaaacaaaaacttgacatagttaataacatagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570473 |
aaatgctagaattaatctcatgatgtggctatgaaattgggattagatgacaaacaaaaacttactcaaacaaaaacttgacatagttaataacatagct |
40570374 |
T |
|
| Q |
215 |
agtcagaggatgaacagttccatctgttactgcagtctttgtagcatctttttcaaccgcttcttcaaaatctccaaaggtctcctgcgctgtttgtgca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570373 |
agtcagaggatgaacagttccatctgttactgcagtctttgtagcatctttttcaaccgcttcttcaaaatctccaaaggtctcctgcgctgtttgtgca |
40570274 |
T |
|
| Q |
315 |
agnnnnnnngtcaaagccattgcagcgtctcttattgcagtgcaagctttgcctttaaaaagtgtttcaatctgcaagttgtcaaaaataatttgtcagc |
414 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40570273 |
agtttttttgtcaaagccattgccgcgtctcttattgcagtgcaagctttgcctttaaaaagtgtttcaatctgcaagttgtcaaaaatagaaagtcagc |
40570174 |
T |
|
| Q |
415 |
attgactattaaatataaaattaaaaaattccattgaggttatggaatttacgagaacaatgcagaagtggtattgcattgagatttatgattttataag |
514 |
Q |
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| T |
40570173 |
attgactattaaatataaaattaaaaaattccattgaggttatggaatttacgagaacaatgcagaagtgatattgcattgagatttatgatttcataag |
40570074 |
T |
|
| Q |
515 |
tcaaaagtcatacctctgaatgcagctcttgcattatttcatacatgtccaaaagtacaaataatttttctggggatctcttgcttttggctattgcttc |
614 |
Q |
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| T |
40570073 |
tcaaaagtcatacctctgaatgcagctcttgcattatttcatacatgtccaaaagtacaaataatttttctggggatctcttgcttttggctattgcttc |
40569974 |
T |
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| Q |
615 |
tccaaagcttagtagcatagaaacactgtttgtagtcacctcggcaaaacactgttcagaaagtgaatcaaagccttcaaatatctgatcacaaactttc |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40569973 |
tccaaagcttagtagcatagaaacactgtttgtagtcacctcggcaaaacactgttcagaaagtgaatcaaagccttcaaatatctgatcacaaactttc |
40569874 |
T |
|
| Q |
715 |
ctctcaccagcaaacaacaatttcacctgttcatattgttgaagttgagaggttttagataaaaggaatagagaaaataataagaacctcggaatgttat |
814 |
Q |
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| T |
40569873 |
ctctcaccagcaaacaacaatttcacctgttcatattgttgaagttgagaggttttagataaaaggaatagagaaaataataagaacctcggaatgttat |
40569774 |
T |
|
| Q |
815 |
tgat |
818 |
Q |
| |
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|||| |
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| T |
40569773 |
tgat |
40569770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 25286349 - 25286461
Alignment:
| Q |
204 |
ataacatagctagtcagaggatgaacagttccatctgttactgcagtctttgtagcatctttttcaaccgcttcttcaaaatctccaaaggtctcctgcg |
303 |
Q |
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||||||||||| || ||||| || |||||||||||| || ||||| || ||||||||||||||||| ||||| ||||| || |||||||| || || | |
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| T |
25286349 |
ataacatagctggttagagggtggacagttccatcttgcacagcagttttagtagcatctttttcaactgcttcctcaaagtcaccaaaggtttcttggg |
25286448 |
T |
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| Q |
304 |
ctgtttgtgcaag |
316 |
Q |
| |
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|||| || ||||| |
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| T |
25286449 |
ctgtctgagcaag |
25286461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 751 - 803
Target Start/End: Complemental strand, 15452279 - 15452227
Alignment:
| Q |
751 |
tgttgaagttgagaggttttagataaaaggaatagagaaaataataagaacct |
803 |
Q |
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||||||||||| ||| |||||||||||| ||| |||||||||||||| ||||| |
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| T |
15452279 |
tgttgaagttgtgagattttagataaaaagaagagagaaaataataaaaacct |
15452227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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