View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_low_18 (Length: 245)
Name: NF19225_low_18
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_low_18 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 245
Target Start/End: Complemental strand, 32898865 - 32898704
Alignment:
| Q |
84 |
agatattagtagaagctattagttacttattagaataacatataaccataaaatgatacaaatttaaacttaaacgaaagaggtttnnnnnnnntcaccc |
183 |
Q |
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| T |
32898865 |
agatattagtagaagctattagttacttattagaataacatataaccataaaatgatacaaatttaaacttaaacgaaagaggtttaaaaaaaatcaccc |
32898766 |
T |
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| Q |
184 |
tcccaggtccacttgaaccatttaagaatccaaggaaaaatttgaacatcaaagtcaacgtt |
245 |
Q |
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| T |
32898765 |
tccccggtccacttgaaccatttaagaatccaaggaaaaatttgaatatcaaagtcaacgtt |
32898704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32899011 - 32898934
Alignment:
| Q |
1 |
tcagaccacactttcaactaataacaataaatttgaattaattatatgagacaaaggttacaaaggcatacatgttta |
78 |
Q |
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| T |
32899011 |
tcagatcacactttcaactaataacaataaatttgaattaattatatgagacaaaggttacagaggcatacatgttta |
32898934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 36443009 - 36443053
Alignment:
| Q |
113 |
ttagaataacatataaccataaaatgatacaaatttaaacttaaa |
157 |
Q |
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| T |
36443009 |
ttagaataacacataaccataaaatgacaaaattttaaacttaaa |
36443053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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