View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_low_19 (Length: 240)
Name: NF19225_low_19
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 32898172 - 32898393
Alignment:
| Q |
18 |
acatgttgcatagactacatttatatattagtatttcaaataaagttttgatagaaatagaactaaggttttatacacctacctttatttcatggtgaat |
117 |
Q |
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| T |
32898172 |
acatgttgcatagactacatttatatattggtatttcaaataaagttttgatagaaatagaactaaggttttatacacctacctttatttcatggtgaat |
32898271 |
T |
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| Q |
118 |
ttgannnnnnnnnattggaagattaacatataataaatatttattttcaggtaaaagattttcatgttattgatagagatgaagacattaatacatattt |
217 |
Q |
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| T |
32898272 |
ttga-ttttttttattggaagattaacgtataataaatatttattttcaggtaaaagattttcatgttatcgatagggatgaagacattaatacatattt |
32898370 |
T |
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| Q |
218 |
tgacaacggtagtaagattgctt |
240 |
Q |
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|||| |||||||||||||||||| |
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| T |
32898371 |
tgactacggtagtaagattgctt |
32898393 |
T |
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