View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_low_2 (Length: 776)
Name: NF19225_low_2
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_low_2 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 212 - 760
Target Start/End: Original strand, 48673176 - 48673723
Alignment:
| Q |
212 |
gtattgactagcgtaaggaggttgcgttaattttgttagggctgaaagttttaataccnnnnnnntctgatgattaacattttcactcagagcctgacta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || || |||||||||||| ||||||||| |||||| |
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| T |
48673176 |
gtattgactagcgtaaggaggttgcgttaattttgttagggttgaaagtcttaataccaaaaaaatccgaagattaacatttt-actcagagcatgacta |
48673274 |
T |
|
| Q |
312 |
ttacgagtcttatattgaaaaattcttccatttctttccttccaaatgatccaaagaactgcaatccaaataatattgaaagtcatacgggaatttttag |
411 |
Q |
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| T |
48673275 |
tcacgagtcatctattgaaaaattcttccatttctttcctttcaaatgatccaaagaactgcaatccaaataatattgaaagccatacgggaatttttag |
48673374 |
T |
|
| Q |
412 |
aaaatccccctaaaccaccaaactgtaagagatgatcttgaatgtttccatgtagagatgttaaaatacctagccaacctcatatcactagccaaagaga |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
48673375 |
aaaatccccctaaaccaccaaactgtaagagatgatcttgaatgtttccatgtagagatgttaaaatacctagccaacctgagatcactagccaaagaga |
48673474 |
T |
|
| Q |
512 |
accaaataccttgcaatttataaaaaggtggtctctatcttccgtataaccataattaacagagctaatattgttagataatgcctagatatgacaccta |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48673475 |
accaaataccttgcaatttataaaaaggtggtctctatcttccgtataaccataatcagcagagctaatattgttagataatgcctagatatgacaccta |
48673574 |
T |
|
| Q |
612 |
accaagagataacttgttcagcattaaactataaacaaaaatattgaatttaagcggaaccatttttagccacaacacatatttaaaaccaacattaaaa |
711 |
Q |
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| T |
48673575 |
accaagagataacttgttcagcattaaactataaacaaaaatattgaatttaagcggaaccatttttagccacaacacatatttaaaaccaacattaaaa |
48673674 |
T |
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| Q |
712 |
tcaagatctatagaagtcaagttcccataagcacttttaacggtatatt |
760 |
Q |
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| T |
48673675 |
tcaagatctatagaagtcaagttcccataagcacttttaacggtatatt |
48673723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 342 - 751
Target Start/End: Complemental strand, 18951788 - 18951369
Alignment:
| Q |
342 |
tttctttccttccaaatgatccaaagaactgcaatccaaataatattgaaagtcatacgggaatttttagaaaatccccctaaaccaccaaactgtaaga |
441 |
Q |
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||||||||||||||||||| |||||||||| ||||| ||||| |||||||| | || |||||||||||||| || ||| | ||||||||||| | |
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| T |
18951788 |
tttctttccttccaaatgacccaaagaactacaatctaaatagtattgaaaaagaggcgagaatttttagaaaacccgtttaagctgccaaactgtaaaa |
18951689 |
T |
|
| Q |
442 |
gatgatcttgaatgtttccatgtagagatgttaaaatacctagccaacctcatatcactagccaaagagaaccaaataccttgcaatttataaaaaggtg |
541 |
Q |
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| T |
18951688 |
gattattctgaatgtttccatgtaaagttgttgaaatatctagccaacctaagatcaataaccaaagagaacaaaaaacattgcagtttataaagagatg |
18951589 |
T |
|
| Q |
542 |
gtctctatcttccgtataaccataattaacagagctaatattgttagataatgcctagatatgacacctaaccaag-----------agataacttgttc |
630 |
Q |
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| T |
18951588 |
gtctctattttctgcataaccacaatgagcagagaaaatattatcatataatgctaaaatatgacatctaaccaagagatctttaagagataacctattt |
18951489 |
T |
|
| Q |
631 |
agcattaaactataaacaaaaatattgaatttaagcggaaccatttttagccacaacacatatttaaaaccaacattaaaatcaagatctatagaagtca |
730 |
Q |
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| T |
18951488 |
agcatcaatctccaaa-aaaaatattgaatttaagcggaatcattttaagccacaacacgtgtttagaaccgacgctaaaatcaacatctgcagaagcca |
18951390 |
T |
|
| Q |
731 |
agttcccataagcacttttaa |
751 |
Q |
| |
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| ||| | ||||||||||||| |
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| T |
18951389 |
atttctcgtaagcacttttaa |
18951369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 691
Target Start/End: Original strand, 44588894 - 44588941
Alignment:
| Q |
644 |
aaacaaaaatattgaatttaagcggaaccatttttagccacaacacat |
691 |
Q |
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| T |
44588894 |
aaacaaaaatattaaatttaagcggaatcattttaagccacaatacat |
44588941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 463
Target Start/End: Complemental strand, 51739566 - 51739443
Alignment:
| Q |
340 |
catttctttccttccaaatgatccaaagaactgcaatccaaataatattgaaagtcatacgggaatttttagaaaatccccctaaaccaccaaactgtaa |
439 |
Q |
| |
|
|||||||||||||||| || | || |||| || |||||| | |||||| |||| || ||| | ||||||| ||||| | ||||| |||||||| || || |
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| T |
51739566 |
catttctttccttccagataacgcagagaattgaaatccataaaatattaaaagccagacgaggatttttaaaaaattcacctaacccaccaaattgcaa |
51739467 |
T |
|
| Q |
440 |
gagatgatcttgaatgtttccatg |
463 |
Q |
| |
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| T |
51739466 |
aaggtgatcttggatgtttccatg |
51739443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 749
Target Start/End: Original strand, 18307 - 18412
Alignment:
| Q |
644 |
aaacaaaaatattgaatttaagcggaaccatttttagccacaacacatatttaaaaccaacattaaaatcaagatctatagaagtcaagttcccataagc |
743 |
Q |
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|||||||||| || |||||||| || | |||||| ||||| || |||| || || || ||||||||||| | |||||| ||||| ||||| ||||||| |
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| T |
18307 |
aaacaaaaatgttaaatttaagagggatcattttaagccaaaaaacatggttgaaccccacattaaaatcgacatctattgaagttaagttgtcataagc |
18406 |
T |
|
| Q |
744 |
actttt |
749 |
Q |
| |
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|||||| |
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| T |
18407 |
actttt |
18412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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