View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19225_low_3 (Length: 614)

Name: NF19225_low_3
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19225_low_3
NF19225_low_3
[»] chr6 (8 HSPs)
chr6 (88-335)||(16396656-16396904)
chr6 (359-605)||(16396412-16396669)
chr6 (20-94)||(16396923-16396997)
chr6 (19-94)||(16399710-16399785)
chr6 (273-354)||(30351445-30351529)
chr6 (116-162)||(16399624-16399670)
chr6 (363-403)||(14312861-14312900)
chr6 (42-86)||(15942726-15942770)
[»] chr8 (2 HSPs)
chr8 (19-93)||(14308059-14308133)
chr8 (343-382)||(9040920-9040959)
[»] chr4 (2 HSPs)
chr4 (272-335)||(5979790-5979854)
chr4 (261-372)||(4873041-4873155)
[»] chr2 (1 HSPs)
chr2 (273-334)||(13793680-13793742)
[»] chr5 (1 HSPs)
chr5 (265-329)||(14613541-14613606)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 88 - 335
Target Start/End: Complemental strand, 16396904 - 16396656
Alignment:
Q  88 tacaagttaaagggtatatgagaattgagaaaatattcatatatgtgaatgagcaccgagttttctgtgttttgaaaatattacatgaaagaacaatagt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16396904 tacaagttaaagggtatatgagaattgagaaaatattcatatatgtgaatgagcaccgagttttctgtgttttgaaaatattacatgaaagaacaatagt 16396805  T
Q  188 agagtttgcttaccatgtccacgatgtagcaatgctgccactcttgaaatacatgtacctaaaacaagtggagatttcttttctaacatccattgtttcc 287  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      
T  16396804 agagtttgcttaccatgtccatgatgtagcaatgctgccactcttgaaatacatgtacctaaaacaagtggagattgcttttctaacatccattgttttt 16396705  T
Q  288 tagaaacacgtggaaa-gactaaaaacaccccaacggtagttaactacc 335  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  16396704 tagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactacc 16396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 359 - 605
Target Start/End: Complemental strand, 16396669 - 16396412
Alignment:
Q  359 ggtagttaactaccgttgagttttattttgtcatttccatatgtttatagaaaattcttgtcgtgtgcgaacaacaacactcaaacaagtgtaccacgtt 458  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |  ||    
T  16396669 ggtagttaactaccgctgagtttttttttgtcatttccatatatttatagaaaattcttgttgtgtgcgaacaacaacactcaaacaaatgtacaaaatt 16396570  T
Q  459 tgaaacaattaaaaggccaaagcccatataacac------------nnnnnnnnnccaccctgctaccattacattatagaataggtgagaaataaagat 546  Q
    ||||||||||||||||||||| | ||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||    
T  16396569 tgaaacaattaaaaggccaaacctcatataacacaaaaaaaaaaaaaaaaaaaaatcaccctgctaccattacattatagaataggtgagaaataaagat 16396470  T
Q  547 cctctcttattacactgagtaacataaaatcaagactattactttttcccaccctatgc 605  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  16396469 cctctcttattacactgagtaacaaaaaatcaagactattac-ttttcccaccctatgc 16396412  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 16396997 - 16396923
Alignment:
Q  20 tttgacactcataagatgatgaaaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaagt 94  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16396997 tttgacactcataagatgataaaaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaagt 16396923  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 16399785 - 16399710
Alignment:
Q  19 gtttgacactcataagatgatgaaaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaagt 94  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |  |  ||||||||||||| |||||||    
T  16399785 gtttgacactcataagatgataaaaatttgttgttgaactccaaaaggtttctgttgtagaaatttacgtacaagt 16399710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 273 - 354
Target Start/End: Original strand, 30351445 - 30351529
Alignment:
Q  273 acatccattgtttcctagaaacacgtggaaa-gactaaaaacaccccaacggtagttaactacctttaact--taactagaaaac 354  Q
    ||||| |||||||||||||||||  || ||| ||| ||||||||||||||||||||||||||| | |||||  ||||||||||||    
T  30351445 acatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataactagaaaac 30351529  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 16399670 - 16399624
Alignment:
Q  116 gaaaatattcatatatgtgaatgagcaccgagttttctgtgttttga 162  Q
    |||||||| ||||||||| |||||| ||||||||||| |||||||||    
T  16399670 gaaaatatacatatatgtaaatgagtaccgagttttcggtgttttga 16399624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 14312900 - 14312861
Alignment:
Q  363 gttaactaccgttgagttttattttgtcatttccatatgtt 403  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  14312900 gttaactaccgttgagtttt-tttggtcatttccatatgtt 14312861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 15942726 - 15942770
Alignment:
Q  42 aaatttgttgttgaactccaaaagggtctttctgtagaaatttac 86  Q
    |||||||||||||||||||||| ||||| || || ||||||||||    
T  15942726 aaatttgttgttgaactccaaaggggtccttttgcagaaatttac 15942770  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 14308059 - 14308133
Alignment:
Q  19 gtttgacactcataagatgatgaaaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaag 93  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||| |   |||||||||||| ||||||    
T  14308059 gtttgacactcataagatgatgaaaaattgttgttgaattccaaaagggtcctgtagtagaaatttacgtacaag 14308133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 9040920 - 9040959
Alignment:
Q  343 taactagaaaactgatggtagttaactaccgttgagtttt 382  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  9040920 taactagaaaactgatgatagttaactaccgctgagtttt 9040959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 5979854 - 5979790
Alignment:
Q  272 aacatccattgtttcctagaaacacgtggaaa-gactaaaaacaccccaacggtagttaactacc 335  Q
    ||||| ||||||||| ||||||||  |||||| ||| ||||||||||||||||||||||||||||    
T  5979854 aacattcattgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactacc 5979790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 4873041 - 4873155
Alignment:
Q  261 atttcttttctaacatccattgtttcctagaaacacgtggaaa-gactaaaaacaccccaacggtagttaactacctttaactta--actagaaaactga 357  Q
    ||||||||| | || |||||| ||| ||| |||||| |||||| ||  ||||||||  || |||||||||||||||  | |||||  |||||||||||||    
T  4873041 atttcttttttgacttccattattttctaaaaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttataactagaaaactga 4873140  T
Q  358 tggtagttaactacc 372  Q
    |||||||||||||||    
T  4873141 tggtagttaactacc 4873155  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 13793680 - 13793742
Alignment:
Q  273 acatccattgtttcctagaaacacgtg-gaaagactaaaaacaccccaacggtagttaactac 334  Q
    |||||||||||||| ||||||||  || ||| ||| |||||||||||||||||||||||||||    
T  13793680 acatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactac 13793742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 14613541 - 14613606
Alignment:
Q  265 cttttctaacatccattgtttcctagaaacacgtggaaa-gactaaaaacaccccaacggtagtta 329  Q
    |||||||  ||||||||||||||||||||||| || |||  || |||||||| |||||||||||||    
T  14613541 cttttctcgcatccattgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagtta 14613606  T

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