View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19225_low_4 (Length: 557)
Name: NF19225_low_4
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 243 - 531
Target Start/End: Complemental strand, 7305597 - 7305303
Alignment:
| Q |
243 |
ttttcggcgcggctctgacaacttttccggcacggtggtccgccggtgaagttactataattatgaaataaatataggaattttgtagaggttatcatgg |
342 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7305597 |
ttttcggcgcggct--gacaacttttccggcacggtggtccgccggtgaagttactataattatgaaataaatataggacttttgtagaggttatcatgg |
7305500 |
T |
|
| Q |
343 |
ggaacaagattgtcattttcgtttctcaaaaagagtttcatagtggccgaaatttagagacaaagtggtgattgggggtatttcaaattctcaccaattt |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
7305499 |
ggaacaagattgtcattttcgtttctcaaaaagagtttcatggtggccgaaatttagagacaaagtggtgatt-ggggtatttcaaattctcaccaatct |
7305401 |
T |
|
| Q |
443 |
aaaaataagttaa---------aaaaggaagaagagatagatttaatggtggcggtggggttgccaaaggagtccggacggagaagtaatggtggctg |
531 |
Q |
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||||||||||||| || |||||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7305400 |
aaaaataagttaatggttattgaataggaagaagagagaaatttaatgatggtggtggggttgccaaaggagtccggacggagaagtaatggtggctg |
7305303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 7305961 - 7305746
Alignment:
| Q |
21 |
ctcatcttcaccaacactaatttattcactccatcttctcattttcgatttccacctaaaaacccaagnnnnnnnccattgatttttcactacaacaact |
120 |
Q |
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| T |
7305961 |
ctcatcttcaccaacactaatttattcactccatcatctcattttcgctttccacctaaaaacccaagaaaaaaaccattgatttttc--tacaacaact |
7305864 |
T |
|
| Q |
121 |
cat--gattccagatctgaagccagcaacatttctatttaatcaacccttatttattgataaaaagaaaaatgaggtcatgaatccaaagccctgcaact |
218 |
Q |
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||| ||||||||||||||||||| |||||||| | || ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
7305863 |
catatgattccagatctgaagccaacaacatttttttt--atcaacccttaattattgatgaaaagaaaaaagaggtcatgaatccaaagccctgcaact |
7305766 |
T |
|
| Q |
219 |
cactctcgtgaactctttgc |
238 |
Q |
| |
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|||||||| ||||||||||| |
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| T |
7305765 |
cactctcgcgaactctttgc |
7305746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 257 - 531
Target Start/End: Original strand, 1310009 - 1310291
Alignment:
| Q |
257 |
ctgacaacttttccggcacggtggtccgccggtgaagttactataattatgaaataaatataggaattttgtagaggttatcatggggaacaagattgtc |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1310009 |
ctgacaacttttccggcacggtggtccgccggtgaagttactataattatgaaataaatataggacttttgtagaggttatcatggggaacaagattgtc |
1310108 |
T |
|
| Q |
357 |
attttcgtttctcaaaaagagtttcatagtggccgaaatttagagacaaagtggtgattgggggtatttcaaattctcaccaatttaaaaataagttaa- |
455 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
1310109 |
attttcgtttctcaaaaagagtttcatggtggccgaaatttagagacaaagtggtgatt-ggggtatttcaaattctcaccaatctaaaaataagttaat |
1310207 |
T |
|
| Q |
456 |
--------aaaaggaagaagagatagatttaatggtggcggtggggttgccaaaggagtccggacggagaagtaatggtggctg |
531 |
Q |
| |
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|| |||||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1310208 |
ggttatttaataggaagaagagagaaatttaatgatggtggtggggttgccaaaggagtccggacggagaagtaatggtggctg |
1310291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 1309631 - 1309848
Alignment:
| Q |
21 |
ctcatcttcaccaacactaatttattcactccatcttctcattttcgatttccacctaaaaacccaagnnnnnnnccattgatttttcactacaacaact |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||| |||||||||| |
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| T |
1309631 |
ctcatcttcaccaacactaatttattcactccatcatctcattttcactttccacctaaaaatccaagaaaaaaaccattgatttttc--tacaacaact |
1309728 |
T |
|
| Q |
121 |
cat--gattccagatctgaagccagcaacatttctatttaatcaacccttatttattgataaaaagaaaaatgaggtcatgaatccaaagccctgcaact |
218 |
Q |
| |
|
||| ||||||||||||||||||| |||||||| | ||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
1309729 |
catatgattccagatctgaagccaacaacattttttttttatcaacccttatttattgatgaaaagaaaaaagaggtcatgaatccaaagccctgcaact |
1309828 |
T |
|
| Q |
219 |
cactctcgtgaactctttgc |
238 |
Q |
| |
|
|||||||| ||||||||||| |
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| T |
1309829 |
cactctcgcgaactctttgc |
1309848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 257 - 531
Target Start/End: Original strand, 37415783 - 37416065
Alignment:
| Q |
257 |
ctgacaacttttccggcacggtggtccgccggtgaagttactataattatgaaataaatataggaattttgtagaggttatcatggggaacaagattgtc |
356 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37415783 |
ctgacaacttttccggaacggtggtccgccggtgaagttactataattatgaaataaatatagggcttttgtagaggttatcatggggaacaagattgtc |
37415882 |
T |
|
| Q |
357 |
attttcgtttctcaaaaagagtttcatagtggccgaaatttagagacaaagtggtgattgggggtatttcaaattctcaccaatttaaaaataagttaa- |
455 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
37415883 |
attttcgtttctcaaaaagagtttcatagtggccgaaatttagagagaaagtggtgatt-ggggtatttcaaattctcaccaatctaaaaataagttaat |
37415981 |
T |
|
| Q |
456 |
--------aaaaggaagaagagatagatttaatggtggcggtggggttgccaaaggagtccggacggagaagtaatggtggctg |
531 |
Q |
| |
|
|| |||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37415982 |
ggttattgaagaggaagaagagagaaatttaatggtggtggtggggttgccaaaggagttcggacggagaagtaatggtggctg |
37416065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 37415410 - 37415622
Alignment:
| Q |
28 |
tcaccaacactaatttattcactccatcttctcattttcgatttccacctaaaaacccaagnnnnnnnccattgatttttcactacaacaactcat--ga |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || |
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|
| T |
37415410 |
tcaccaacactaatttattcactccatcttctcattttcgctttccacctaaaaacccaagaaaaaaaccattgatttttcactacaacaactcatatga |
37415509 |
T |
|
| Q |
126 |
ttccagatctgaagccagcaacatttctatttaatcaacccttatttattgataaaaagaaaaatgaggtcatgaatccaaagccctgcaactcactctc |
225 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37415510 |
ttccagatctgaagcaaacaacatttctatttaaccaacccttatttattgataaaaagaaaaacgaggtcatgaatccaaagccctgcaactcactctc |
37415609 |
T |
|
| Q |
226 |
gtgaactctttgc |
238 |
Q |
| |
|
||||||||||||| |
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| T |
37415610 |
gtgaactctttgc |
37415622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 450
Target Start/End: Original strand, 31282089 - 31282188
Alignment:
| Q |
351 |
attgtcattttcgtttctcaaaaagagtttcatagtggccg-aaatttagagacaaagtggtgattgggggtatttcaaattctcaccaatttaaaaata |
449 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||| ||||||| ||||| |||| |||||||||||| || || ||||||| |||||||||| |||||||| |
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| T |
31282089 |
attgtcacttttatttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgatt-ggagtttttcaaactctcaccaatctaaaaata |
31282187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 450
Target Start/End: Complemental strand, 55424629 - 55424530
Alignment:
| Q |
351 |
attgtcattttcgtttctcaaaaagagtttcatagtggccg-aaatttagagacaaagtggtgattgggggtatttcaaattctcaccaatttaaaaata |
449 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||| ||||||| ||||| |||| |||||||||||| || || ||||||| |||||||||| |||||||| |
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|
| T |
55424629 |
attgtcacttttatttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgatt-ggagtttttcaaactctcaccaatctaaaaata |
55424531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 11797242 - 11797026
Alignment:
| Q |
18 |
cttctcatcttcaccaacactaatttattcactccatcttctcattttcgatttccacctaaaaacccaagnnnnnnnccattgatttttcactacaaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
11797242 |
cttctcatcttcaccaacactaatttattcactccatcttctcattttcgatttccacctaaaaacccatgaaaaaaaccattgatttttcactacaact |
11797143 |
T |
|
| Q |
118 |
actcatgattccagatctgaagccagcaacatttctatttaatcaacccttatttattgataaaaagaaaaatgaggtcatgaatccaaagccctgcaac |
217 |
Q |
| |
|
| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11797142 |
cat-atgattccaaatctgaagccaacaacatttctatttaatcaacccttatttattgataaaaagaaaaatgaggtcatgaatccaaagccctgcaac |
11797044 |
T |
|
| Q |
218 |
tcactctcgtgaactctt |
235 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11797043 |
tcactctcgtgaactctt |
11797026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 380 - 534
Target Start/End: Original strand, 11796838 - 11797002
Alignment:
| Q |
380 |
tcatagtggccgaaatttagagacaaagtggtgattgggggtatttcaaattctcaccaatttaaaaataagtta---------aaaaaggaagaagaga |
470 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11796838 |
tcatattggccgaaatttagagacaaagtggtgattgggggtatttcaaattctcaccaatttaaaaataagttaatggttattaaaaaggaagaagaga |
11796937 |
T |
|
| Q |
471 |
tagatttaatggtgg-cggtggggttgccaaaggagtccggacggagaagtaatggtggctgaaa |
534 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11796938 |
taaatttaatggtggtgggtggggttgccaaaggagtccggacggagaagtaatggtggctgaaa |
11797002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 450
Target Start/End: Original strand, 28656669 - 28656768
Alignment:
| Q |
351 |
attgtcattttcgtttctcaaaaagagtttcatagtggccg-aaatttagagacaaagtggtgattgggggtatttcaaattctcaccaatttaaaaata |
449 |
Q |
| |
|
||||||| ||| |||||||||||||||| |||| ||||||| ||||| |||| |||||||||||| || || ||||||| |||||||||| |||||||| |
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|
| T |
28656669 |
attgtcacttttgtttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgatt-ggagtttttcaaactctcaccaatctaaaaata |
28656767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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