View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_low_6 (Length: 474)
Name: NF19225_low_6
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Original strand, 32713718 - 32714165
Alignment:
| Q |
10 |
aaaaatattctacaagatatcggatattcacatttttattgtaaaaatattgtactcaaattgggaaatgattaatgattagcaagttactagcacttag |
109 |
Q |
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| T |
32713718 |
aaaaatattctacaagatatcggatattcacatttttattgtaaaaatattgtactcaaattgggaaatgattaatgattagcaagttactagcacttag |
32713817 |
T |
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| Q |
110 |
ctgtaaaataattgaataataatactctctcaaatagggtcccaatataatctgttccaacactaaaatcgtaacaaaaaaccctacttgattcttgcct |
209 |
Q |
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| T |
32713818 |
ctgtaaaataattgaataataatactctctcaaatagggtcccaatataatctgttccaacactaaaatcgtaacaaaaaaccctacatgattcttgcct |
32713917 |
T |
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| Q |
210 |
cccaccccccaagaaaaaatattaaatgaagaagataagtatataaagaaagagagaggaacatgggtctataaccccttttactcaaggtcttagcctt |
309 |
Q |
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| T |
32713918 |
cccaccccccaagaaaaaatattaaatgaagaagataagtatatatagaaagagagaggaacatgggtctataaccccttttactcaaggtcttagcctt |
32714017 |
T |
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| Q |
310 |
atatatatccaagtctttgccacaaactttccacagcttgaaaacaacataccaaaatgagttcttcattttggactttgtgtttgattttatcatcact |
409 |
Q |
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| T |
32714018 |
atatatatccaagtctttgccacaaactttccacagcttgaaaacaacataccaaaatgagttcttcattttggactttgtgtttgattttagcatcact |
32714117 |
T |
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| Q |
410 |
tgtctctttttcattatgtgctcctccaaggacaccagtggatgtacc |
457 |
Q |
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| T |
32714118 |
tgtctctttttcattatgtgctcctccaaggacaccagtggatgtacc |
32714165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 145 - 457
Target Start/End: Original strand, 32717038 - 32717353
Alignment:
| Q |
145 |
agggtcccaatataatctg-ttccaacactaaaatcgtaacaaaaaaccctacttgattcttgcctcccacccccc---aagaaaaaatattaaatgaag |
240 |
Q |
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| T |
32717038 |
agggtcccaatataagttggttccaacactaaaatcgtaacaaagcctaatacatgatttatgcctcccaccaccctccaagaaaaattattaaaagaag |
32717137 |
T |
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| Q |
241 |
aagataagtatataaagaaagagagaggaacatggg-tct-ataaccccttttactcaaggtcttagccttatatatatccaagtctttgccacaaactt |
338 |
Q |
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| T |
32717138 |
aagataagtata--aagaaagagagaggaacatggggtcttataaccctttttacccatggtcttagcct-atatatacccaagtcttagccacaaactt |
32717234 |
T |
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| Q |
339 |
tccacagcttgaaaacaacataccaaaatgagttcttcattttggactttgtgtttgattttatcatcacttgtctctttttcattatgtgctcctccaa |
438 |
Q |
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| T |
32717235 |
ttcacaacttaaaaacaacacaccaaaatgagttcttcattttggtctttatgtttgatcttagcatcactagtttcttcttcactctgtgctcctccaa |
32717334 |
T |
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| Q |
439 |
ggacaccagtggatgtacc |
457 |
Q |
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| T |
32717335 |
ggaagccagttgatgtacc |
32717353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 32716932 - 32716991
Alignment:
| Q |
33 |
atattcacatttttattgtaaaaatattgtactcaaattgggaaatgattaatgattagc |
92 |
Q |
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| T |
32716932 |
atattcacaattttattgtcaaaatattgtactctaattgagaaatgatggatgattagc |
32716991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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